Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0901
(549 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42587-1|AAB17433.1| 299|Drosophila melanogaster ribosomal prot... 61 8e-10
BT025837-1|ABF85737.1| 299|Drosophila melanogaster IP11377p pro... 61 8e-10
AY118961-1|AAM50821.1| 299|Drosophila melanogaster LD40873p pro... 61 8e-10
AL132792-4|CAB60023.1| 299|Drosophila melanogaster EG:BACR19J1.... 61 8e-10
AF080131-1|AAD19341.1| 312|Drosophila melanogaster ribosomal pr... 61 8e-10
AE014298-104|AAF45546.1| 299|Drosophila melanogaster CG7434-PA ... 61 8e-10
AY089455-1|AAL90193.1| 312|Drosophila melanogaster AT26853p pro... 50 3e-06
AE013599-3561|AAF46972.1| 312|Drosophila melanogaster CG9871-PA... 50 3e-06
BT023326-1|AAY55742.1| 245|Drosophila melanogaster IP10161p pro... 29 4.1
AE014134-2615|AAF53474.1| 254|Drosophila melanogaster CG7631-PA... 29 4.1
>U42587-1|AAB17433.1| 299|Drosophila melanogaster ribosomal protein
Rpl22 protein.
Length = 299
Score = 61.3 bits (142), Expect = 8e-10
Identities = 26/39 (66%), Positives = 33/39 (84%)
Frame = +1
Query: 139 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNL 255
+L+FTIDCT+ AEDSI+DV +FEKY+K +KV GK NNL
Sbjct: 190 SLRFTIDCTNIAEDSIMDVADFEKYIKARLKVNGKVNNL 228
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/59 (37%), Positives = 31/59 (52%)
Frame = +3
Query: 258 NHVVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHDAYELRYFNI 434
N+V R K K+ +++D+ FS DW+RVVA+ D+YELRYF I
Sbjct: 230 NNVTFERSKLKLIVSSDVHFSKAYLKYLTKKYLKKNSLRDWIRVVANEKDSYELRYFRI 288
>BT025837-1|ABF85737.1| 299|Drosophila melanogaster IP11377p
protein.
Length = 299
Score = 61.3 bits (142), Expect = 8e-10
Identities = 26/39 (66%), Positives = 33/39 (84%)
Frame = +1
Query: 139 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNL 255
+L+FTIDCT+ AEDSI+DV +FEKY+K +KV GK NNL
Sbjct: 190 SLRFTIDCTNIAEDSIMDVADFEKYIKARLKVNGKVNNL 228
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/59 (37%), Positives = 31/59 (52%)
Frame = +3
Query: 258 NHVVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHDAYELRYFNI 434
N+V R K K+ +++D+ FS DW+RVVA+ D+YELRYF I
Sbjct: 230 NNVTFERSKLKLIVSSDVHFSKAYLKYLTKKYLKKNSLRDWIRVVANEKDSYELRYFRI 288
>AY118961-1|AAM50821.1| 299|Drosophila melanogaster LD40873p
protein.
Length = 299
Score = 61.3 bits (142), Expect = 8e-10
Identities = 26/39 (66%), Positives = 33/39 (84%)
Frame = +1
Query: 139 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNL 255
+L+FTIDCT+ AEDSI+DV +FEKY+K +KV GK NNL
Sbjct: 190 SLRFTIDCTNIAEDSIMDVADFEKYIKARLKVNGKVNNL 228
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/59 (37%), Positives = 31/59 (52%)
Frame = +3
Query: 258 NHVVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHDAYELRYFNI 434
N+V R K K+ +++D+ FS DW+RVVA+ D+YELRYF I
Sbjct: 230 NNVTFERSKLKLIVSSDVHFSKAYLKYLTKKYLKKNSLRDWIRVVANEKDSYELRYFRI 288
>AL132792-4|CAB60023.1| 299|Drosophila melanogaster
EG:BACR19J1.4,FBgn0015288;RpL22 protein.
Length = 299
Score = 61.3 bits (142), Expect = 8e-10
Identities = 26/39 (66%), Positives = 33/39 (84%)
Frame = +1
Query: 139 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNL 255
+L+FTIDCT+ AEDSI+DV +FEKY+K +KV GK NNL
Sbjct: 190 SLRFTIDCTNIAEDSIMDVADFEKYIKARLKVNGKVNNL 228
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/59 (37%), Positives = 31/59 (52%)
Frame = +3
Query: 258 NHVVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHDAYELRYFNI 434
N+V R K K+ +++D+ FS DW+RVVA+ D+YELRYF I
Sbjct: 230 NNVTFERSKLKLIVSSDVHFSKAYLKYLTKKYLKKNSLRDWIRVVANEKDSYELRYFRI 288
>AF080131-1|AAD19341.1| 312|Drosophila melanogaster ribosomal
protein L22 protein.
Length = 312
Score = 61.3 bits (142), Expect = 8e-10
Identities = 26/39 (66%), Positives = 33/39 (84%)
Frame = +1
Query: 139 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNL 255
+L+FTIDCT+ AEDSI+DV +FEKY+K +KV GK NNL
Sbjct: 203 SLRFTIDCTNIAEDSIMDVADFEKYIKARLKVNGKVNNL 241
Score = 47.6 bits (108), Expect = 1e-05
Identities = 22/59 (37%), Positives = 31/59 (52%)
Frame = +3
Query: 258 NHVVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHDAYELRYFNI 434
N+V R K K+ +++D+ FS DW+RVVA+ D+YELRYF I
Sbjct: 243 NNVTFERSKLKLTVSSDVHFSKAYLKYLTKKYLKKNSLRDWIRVVANEKDSYELRYFRI 301
>AE014298-104|AAF45546.1| 299|Drosophila melanogaster CG7434-PA
protein.
Length = 299
Score = 61.3 bits (142), Expect = 8e-10
Identities = 26/39 (66%), Positives = 33/39 (84%)
Frame = +1
Query: 139 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNL 255
+L+FTIDCT+ AEDSI+DV +FEKY+K +KV GK NNL
Sbjct: 190 SLRFTIDCTNIAEDSIMDVADFEKYIKARLKVNGKVNNL 228
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/59 (37%), Positives = 31/59 (52%)
Frame = +3
Query: 258 NHVVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHDAYELRYFNI 434
N+V R K K+ +++D+ FS DW+RVVA+ D+YELRYF I
Sbjct: 230 NNVTFERSKLKLIVSSDVHFSKAYLKYLTKKYLKKNSLRDWIRVVANEKDSYELRYFRI 288
>AY089455-1|AAL90193.1| 312|Drosophila melanogaster AT26853p
protein.
Length = 312
Score = 49.6 bits (113), Expect = 3e-06
Identities = 20/37 (54%), Positives = 27/37 (72%)
Frame = +1
Query: 145 KFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNL 255
+F IDC AED ILD+ +FE+YLK H+K++ K N L
Sbjct: 193 RFVIDCACVAEDMILDLADFEQYLKTHIKIKNKLNQL 229
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 375 DWLRVVASAHDAYELRYFNI 434
DWLRVV++A D + + YF I
Sbjct: 271 DWLRVVSTAKDTFAMTYFKI 290
>AE013599-3561|AAF46972.1| 312|Drosophila melanogaster CG9871-PA
protein.
Length = 312
Score = 49.6 bits (113), Expect = 3e-06
Identities = 20/37 (54%), Positives = 27/37 (72%)
Frame = +1
Query: 145 KFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNL 255
+F IDC AED ILD+ +FE+YLK H+K++ K N L
Sbjct: 193 RFVIDCACVAEDMILDLADFEQYLKTHIKIKNKLNQL 229
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 375 DWLRVVASAHDAYELRYFNI 434
DWLRVV++A D + + YF I
Sbjct: 271 DWLRVVSTAKDTFAMTYFKI 290
>BT023326-1|AAY55742.1| 245|Drosophila melanogaster IP10161p
protein.
Length = 245
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 296 SDFRLIPGDDNVIARLFVLPSTLTCSFK 213
S R +P D++ LFVLPST CS K
Sbjct: 82 SCIRFVPADEDEENYLFVLPSTSGCSSK 109
>AE014134-2615|AAF53474.1| 254|Drosophila melanogaster CG7631-PA
protein.
Length = 254
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 296 SDFRLIPGDDNVIARLFVLPSTLTCSFK 213
S R +P D++ LFVLPST CS K
Sbjct: 91 SCIRFVPADEDEENYLFVLPSTSGCSSK 118
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,013,345
Number of Sequences: 53049
Number of extensions: 356916
Number of successful extensions: 868
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2089831299
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -