Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0901
         (549 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58760-2|AAK31460.1|  130|Caenorhabditis elegans Ribosomal prote...    48   6e-06
Z81147-4|CAB03529.1|  578|Caenorhabditis elegans Hypothetical pr...    28   3.9  
AF045641-5|AAC02577.2|  554|Caenorhabditis elegans Hypothetical ...    27   6.7  
U58760-3|AAL02443.1|   53|Caenorhabditis elegans Ribosomal prote...    27   8.9  

>U58760-2|AAK31460.1|  130|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 22, isoform a protein.
          Length = 130

 Score = 47.6 bits (108), Expect = 6e-06
 Identities = 19/40 (47%), Positives = 28/40 (70%)
 Frame = +1

Query: 139 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLA 258
           +LKF ++C +P ED IL + + E +L E +KV GKT +LA
Sbjct: 20  HLKFNVECKNPVEDGILRIEDLEAFLNEKIKVNGKTGHLA 59



 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 22/60 (36%), Positives = 33/60 (55%)
 Frame = +3

Query: 255 SNHVVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHDAYELRYFNI 434
           +N+V V   K+KV++ +++PFS                  DWLRVVA   + YE+RYF+I
Sbjct: 60  ANNVKVEVAKSKVSVVSEVPFSKRYLKYLTKKYLKRNSLRDWLRVVAVNKNTYEVRYFHI 119


>Z81147-4|CAB03529.1|  578|Caenorhabditis elegans Hypothetical
           protein T09E11.5 protein.
          Length = 578

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 107 LPPFTPFLPVFWCNWAFLATGFFVTAIVAN 18
           L  F  FL     ++AF+ T FF T +VAN
Sbjct: 410 LKEFVDFLEASQPDYAFILTRFFATGVVAN 439


>AF045641-5|AAC02577.2|  554|Caenorhabditis elegans Hypothetical
           protein F53H1.3 protein.
          Length = 554

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -1

Query: 279 PWRRQRDC*VICFALNFDVFLQVFLEVTYV*DTILSGMRAVD 154
           PW R RD       + FD+ L   LEV Y  D ILS    ++
Sbjct: 7   PWDRFRDWLHCICVVTFDLELGQALEVIYPGDAILSNTEKIN 48


>U58760-3|AAL02443.1|   53|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 22, isoform b protein.
          Length = 53

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 139 NLKFTIDCTHPAEDSILDV 195
           +LKF ++C +P ED IL +
Sbjct: 20  HLKFNVECKNPVEDGILRI 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,305,514
Number of Sequences: 27780
Number of extensions: 186672
Number of successful extensions: 525
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)