Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0901
(549 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g27770.1 68418.m03330 60S ribosomal protein L22 (RPL22C) ribo... 47 7e-06
At1g02830.1 68414.m00243 60S ribosomal protein L22 (RPL22A) simi... 47 1e-05
At3g05560.2 68416.m00614 60S ribosomal protein L22-2 (RPL22B) id... 46 2e-05
At3g05560.1 68416.m00613 60S ribosomal protein L22-2 (RPL22B) id... 46 2e-05
At3g60970.1 68416.m06823 ABC transporter family protein ABC tran... 27 6.2
At2g01710.1 68415.m00099 DNAJ heat shock N-terminal domain-conta... 27 6.2
At1g04120.1 68414.m00401 ABC transporter family protein Strong s... 27 8.3
>At5g27770.1 68418.m03330 60S ribosomal protein L22 (RPL22C)
ribosomal protein L22 (cytosolic), Rattus norvegicus,
PIR:S52084
Length = 124
Score = 47.2 bits (107), Expect = 7e-06
Identities = 18/43 (41%), Positives = 30/43 (69%)
Frame = +1
Query: 142 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLAITLS 270
+ FTIDC+ P +D I+++ + EK+L+E +KV GK L ++S
Sbjct: 16 VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVS 58
Score = 45.2 bits (102), Expect = 3e-05
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +3
Query: 264 VVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYFNI 434
V + R+K+K+ +TAD FS DWLRV+A+ D YELRYFNI
Sbjct: 57 VSITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNI 115
>At1g02830.1 68414.m00243 60S ribosomal protein L22 (RPL22A) similar
to ribosomal protein L22 GI:710294 from [Rattus
norvegicus]
Length = 127
Score = 46.8 bits (106), Expect = 1e-05
Identities = 18/43 (41%), Positives = 29/43 (67%)
Frame = +1
Query: 142 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLAITLS 270
+ F IDC+ P +D+IL++ EK+L+E +KV GK L ++S
Sbjct: 18 VSFVIDCSKPVDDTILEIATLEKFLQERIKVRGKAGALGNSVS 60
Score = 35.5 bits (78), Expect = 0.024
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = +3
Query: 258 NHVVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYFN 431
N V + R K+ + A+ FS DWLRV+AS D YE+RYF
Sbjct: 57 NSVSITRYNGKINVNANSNFSKRYLKYLTKKYLKKYNLRDWLRVIASNKDKNVYEVRYFR 116
Query: 432 I 434
I
Sbjct: 117 I 117
>At3g05560.2 68416.m00614 60S ribosomal protein L22-2 (RPL22B)
identical to 60S ribosomal protein L22-2 SP:Q9M9W1 from
[Arabidopsis thaliana]
Length = 124
Score = 46.0 bits (104), Expect = 2e-05
Identities = 17/38 (44%), Positives = 27/38 (71%)
Frame = +1
Query: 142 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNL 255
+ FTIDC+ P +D I+++ + EK+L+E +KV GK L
Sbjct: 16 VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGAL 53
Score = 46.0 bits (104), Expect = 2e-05
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +3
Query: 264 VVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYFNI 434
V + R+K+K+ +TAD FS DWLRV+A+ D YELRYFNI
Sbjct: 57 VTITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNI 115
>At3g05560.1 68416.m00613 60S ribosomal protein L22-2 (RPL22B)
identical to 60S ribosomal protein L22-2 SP:Q9M9W1 from
[Arabidopsis thaliana]
Length = 124
Score = 46.0 bits (104), Expect = 2e-05
Identities = 17/38 (44%), Positives = 27/38 (71%)
Frame = +1
Query: 142 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNL 255
+ FTIDC+ P +D I+++ + EK+L+E +KV GK L
Sbjct: 16 VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGAL 53
Score = 46.0 bits (104), Expect = 2e-05
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +3
Query: 264 VVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYFNI 434
V + R+K+K+ +TAD FS DWLRV+A+ D YELRYFNI
Sbjct: 57 VTITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNI 115
>At3g60970.1 68416.m06823 ABC transporter family protein ABC
transporter-like proteins
Length = 1037
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -2
Query: 245 VLPSTLTCSFKYFSKLPTSKILSSAGCVQSIVNFKLIFRL 126
+L S YF PT +IL+ A QS+++ ++ +L
Sbjct: 560 MLCSIFRAPMSYFDSTPTGRILNRASTDQSVLDLEMAVKL 599
>At2g01710.1 68415.m00099 DNAJ heat shock N-terminal
domain-containing protein simlar to AHM1 [Triticum
aestivum] GI:6691467; contains Pfam profile PF00226:
DnaJ domain
Length = 311
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -2
Query: 149 NFKLIFRLMPLPRILPPFTPFLPVFWCNWAFLATGF 42
N + F +P+ LPP P ++C W F GF
Sbjct: 192 NCQRAFHAASIPQ-LPPLIPGKDEYYCCWGFFPMGF 226
>At1g04120.1 68414.m00401 ABC transporter family protein Strong
similarity to MRP-like ABC transporter gb|U92650 from A.
thaliana and canalicular multi-drug resistance protein
gb|L49379 from Rattus norvegicus
Length = 1514
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -2
Query: 251 LFVLPSTLTCSFKYFSKLPTSKILSSAGCVQSIVNFKLIFRL 126
L +L S +F P +IL+ QS+V+ + FRL
Sbjct: 1024 LNMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRL 1065
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,578,327
Number of Sequences: 28952
Number of extensions: 170877
Number of successful extensions: 467
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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