Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0899
         (667 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q09F58 Cluster: Heme maturase; n=4; Alveolata|Rep: Heme...    36   0.88 
UniRef50_Q6ZSJ0 Cluster: CDNA FLJ45488 fis, clone BRTHA2003759; ...    34   2.7  
UniRef50_UPI0000D561A7 Cluster: PREDICTED: similar to CG31660-PC...    33   4.7  

>UniRef50_Q09F58 Cluster: Heme maturase; n=4; Alveolata|Rep: Heme
           maturase - Tetrahymena paravorax
          Length = 514

 Score = 35.9 bits (79), Expect = 0.88
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = -1

Query: 388 YRFMFRHIFA-YILVNIFLFAY*VY*YKYKHSLLTHFFWECFFFNLIRVHYYIVY 227
           Y F++  IF  +I++NIFL+ Y  Y +KYK   L H +   F F +I + +Y  Y
Sbjct: 351 YLFIYYFIFNDFIIINIFLYLYRYYIFKYK---LLHIY--IFNFIIIIIFFYFSY 400


>UniRef50_Q6ZSJ0 Cluster: CDNA FLJ45488 fis, clone BRTHA2003759;
           n=2; Homo sapiens|Rep: CDNA FLJ45488 fis, clone
           BRTHA2003759 - Homo sapiens (Human)
          Length = 130

 Score = 34.3 bits (75), Expect = 2.7
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = -1

Query: 388 YRFMFRHIFAYILVNIFLFAY*VY*YKYKH-SLLTHFFWECFFFNLIRVHYYI-VYCF 221
           Y FM+  IF YI + I+++ Y VY Y Y +  + T+ +   F +  I ++ Y+ +Y +
Sbjct: 10  YMFMYIFIFIYIFIYIYIYVY-VYIYLYIYFYIFTYIYLYIFIYIYICLYIYLYIYLY 66


>UniRef50_UPI0000D561A7 Cluster: PREDICTED: similar to CG31660-PC,
           isoform C; n=1; Tribolium castaneum|Rep: PREDICTED:
           similar to CG31660-PC, isoform C - Tribolium castaneum
          Length = 641

 Score = 33.5 bits (73), Expect = 4.7
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +3

Query: 504 IFHDSSRNGLLDFERLTIFTHRDLWSLVIQQPNNWLLAI 620
           IF + + +   D  RLT+ TH ++  LV++ PN  +LA+
Sbjct: 48  IFANRASDNFSDIARLTLTTHPEILGLVLKSPNEQILAL 86


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 512,651,097
Number of Sequences: 1657284
Number of extensions: 8559986
Number of successful extensions: 17038
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16933
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50826451017
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)