Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0899
         (667 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1367| Best HMM Match : EGF_2 (HMM E-Value=5.3e-06)                  31   0.84 
SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)          28   7.9  

>SB_1367| Best HMM Match : EGF_2 (HMM E-Value=5.3e-06)
          Length = 776

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 313 YKYKHSLLTHFFWECFFFNLIRVHYYIVYC 224
           Y +K SL+TH FW+ +    +RVH  +  C
Sbjct: 356 YHFKQSLMTHPFWKDYSLPSLRVHTRLWLC 385


>SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/56 (17%), Positives = 25/56 (44%)
 Frame = -1

Query: 388 YRFMFRHIFAYILVNIFLFAY*VY*YKYKHSLLTHFFWECFFFNLIRVHYYIVYCF 221
           Y + + + + Y     + + Y  Y Y Y H    ++++  +++     +YY  Y +
Sbjct: 103 YYYYYYYYYYYYYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYYYYYYYYYY 158


>SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)
          Length = 1163

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
 Frame = -1

Query: 388  YRFMFRHIFAYILVNIFLFAY*VY*YKYKHSLLTHFFW-----ECFFFNLIRVHYYIV 230
            +  +  H F  I+ + + F   +  + Y  S++TH F+     + +FF++I  HY+ V
Sbjct: 1020 FSIITHHYFFSIITHHYFFV--IITHHYFFSIITHHFFFSIITDHYFFSIITHHYFFV 1075


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,590,693
Number of Sequences: 59808
Number of extensions: 247845
Number of successful extensions: 392
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)