Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0899
         (667 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens ...    34   0.40 

>AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45488 fis, clone BRTHA2003759. ).
          Length = 130

 Score = 34.3 bits (75), Expect = 0.40
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = -1

Query: 388 YRFMFRHIFAYILVNIFLFAY*VY*YKYKH-SLLTHFFWECFFFNLIRVHYYI-VYCF 221
           Y FM+  IF YI + I+++ Y VY Y Y +  + T+ +   F +  I ++ Y+ +Y +
Sbjct: 10  YMFMYIFIFIYIFIYIYIYVY-VYIYLYIYFYIFTYIYLYIFIYIYICLYIYLYIYLY 66



 Score = 31.5 bits (68), Expect = 2.8
 Identities = 15/53 (28%), Positives = 30/53 (56%)
 Frame = -1

Query: 382 FMFRHIFAYILVNIFLFAY*VY*YKYKHSLLTHFFWECFFFNLIRVHYYIVYC 224
           +++ ++F YI + I++F Y +Y Y Y +  L  +F+  F +  + +  YI  C
Sbjct: 6   YVYIYMFMYIFIFIYIFIY-IYIYVYVYIYLYIYFY-IFTYIYLYIFIYIYIC 56



 Score = 31.5 bits (68), Expect = 2.8
 Identities = 17/52 (32%), Positives = 30/52 (57%)
 Frame = -1

Query: 388 YRFMFRHIFAYILVNIFLFAY*VY*YKYKHSLLTHFFWECFFFNLIRVHYYI 233
           Y +MF +IF +I + I+++ Y VY Y Y   L  +F+   + +  I ++ YI
Sbjct: 8   YIYMFMYIFIFIYIFIYIYIY-VYVYIY---LYIYFYIFTYIYLYIFIYIYI 55


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,813,971
Number of Sequences: 237096
Number of extensions: 1256534
Number of successful extensions: 1533
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1531
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7535049140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)