Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0899
(667 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical pr... 31 0.97
Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical pr... 31 0.97
Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical pr... 31 0.97
AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding c... 31 0.97
Z78539-8|CAE17715.1| 223|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z69661-7|CAE17832.1| 223|Caenorhabditis elegans Hypothetical pr... 28 5.2
AF162674-1|AAF80462.1| 575|Caenorhabditis elegans CNT-like nucl... 28 5.2
AF016413-4|AAM29683.1| 454|Caenorhabditis elegans Hypothetical ... 28 5.2
AF016413-3|AAB65256.3| 555|Caenorhabditis elegans Hypothetical ... 28 5.2
Z82078-7|CAB04947.3| 801|Caenorhabditis elegans Hypothetical pr... 28 6.8
U21319-7|AAL16307.1| 469|Caenorhabditis elegans Hypothetical pr... 28 6.8
AF497514-1|AAM33381.1| 801|Caenorhabditis elegans heavy metal t... 28 6.8
AF497513-1|AAM33380.1| 801|Caenorhabditis elegans heavy metal t... 28 6.8
AF490977-1|AAQ06435.1| 801|Caenorhabditis elegans ABC6 protein ... 28 6.8
>Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical protein
C48B4.4c protein.
Length = 1704
Score = 30.7 bits (66), Expect = 0.97
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -1
Query: 343 IFLFAY*VY*YKYKHSLLTHFFWECFFFNLIRVHYYIVYCF 221
IFLF + + + Y H + FW +FF+ + Y + + F
Sbjct: 1185 IFLFMFLAFHWMYDHLAIVILFWFLYFFSSVPFIYAVSFLF 1225
>Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical protein
C48B4.4b protein.
Length = 1691
Score = 30.7 bits (66), Expect = 0.97
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -1
Query: 343 IFLFAY*VY*YKYKHSLLTHFFWECFFFNLIRVHYYIVYCF 221
IFLF + + + Y H + FW +FF+ + Y + + F
Sbjct: 1172 IFLFMFLAFHWMYDHLAIVILFWFLYFFSSVPFIYAVSFLF 1212
>Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical protein
C48B4.4a protein.
Length = 1689
Score = 30.7 bits (66), Expect = 0.97
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -1
Query: 343 IFLFAY*VY*YKYKHSLLTHFFWECFFFNLIRVHYYIVYCF 221
IFLF + + + Y H + FW +FF+ + Y + + F
Sbjct: 1170 IFLFMFLAFHWMYDHLAIVILFWFLYFFSSVPFIYAVSFLF 1210
>AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding
cassette transporter protein.
Length = 1704
Score = 30.7 bits (66), Expect = 0.97
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -1
Query: 343 IFLFAY*VY*YKYKHSLLTHFFWECFFFNLIRVHYYIVYCF 221
IFLF + + + Y H + FW +FF+ + Y + + F
Sbjct: 1185 IFLFMFLAFHWMYDHLAIVILFWFLYFFSSVPFIYAVSFLF 1225
>Z78539-8|CAE17715.1| 223|Caenorhabditis elegans Hypothetical
protein F48F7.8 protein.
Length = 223
Score = 28.3 bits (60), Expect = 5.2
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Frame = -1
Query: 475 QYFTTVRYKRFSNLALKTPLF*RSS*VRPYRFMFRHIF-----AYILVNIFLFAY*VY*Y 311
+YFT ++ F +LA +P S + R IF YIL++ F + ++ Y
Sbjct: 130 EYFTLWLHRIFYSLA--SPYILLSGFTEYFTLWLRRIFYSLASPYILLSGFTEYFTLWLY 187
Query: 310 KYKHSLLTHFFWECFFFNLIRVH 242
+ +SL +HFF F F +++ H
Sbjct: 188 RIFYSLASHFFE--FGFEILKEH 208
>Z69661-7|CAE17832.1| 223|Caenorhabditis elegans Hypothetical
protein F48F7.8 protein.
Length = 223
Score = 28.3 bits (60), Expect = 5.2
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Frame = -1
Query: 475 QYFTTVRYKRFSNLALKTPLF*RSS*VRPYRFMFRHIF-----AYILVNIFLFAY*VY*Y 311
+YFT ++ F +LA +P S + R IF YIL++ F + ++ Y
Sbjct: 130 EYFTLWLHRIFYSLA--SPYILLSGFTEYFTLWLRRIFYSLASPYILLSGFTEYFTLWLY 187
Query: 310 KYKHSLLTHFFWECFFFNLIRVH 242
+ +SL +HFF F F +++ H
Sbjct: 188 RIFYSLASHFFE--FGFEILKEH 208
>AF162674-1|AAF80462.1| 575|Caenorhabditis elegans CNT-like
nucleoside transporter protein.
Length = 575
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = -1
Query: 397 VRPYRFMFRHIFAYILVNIFLFAY*VY*YKYKHSLL--THFFWECFFFNLI 251
+RPY + + ++ + FL A ++ Y+ L+ T FFW C+ NLI
Sbjct: 43 IRPYFGIGSLLIFLVVYHGFLVAAGIHNYQKAAPLIYVTLFFWICYLLNLI 93
>AF016413-4|AAM29683.1| 454|Caenorhabditis elegans Hypothetical
protein F27E11.2b protein.
Length = 454
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = -1
Query: 397 VRPYRFMFRHIFAYILVNIFLFAY*VY*YKYKHSLL--THFFWECFFFNLI 251
+RPY + + ++ + FL A ++ Y+ L+ T FFW C+ NLI
Sbjct: 43 IRPYFGIGSLLIFLVVYHGFLVAAGIHNYQKAAPLIYVTLFFWICYLLNLI 93
>AF016413-3|AAB65256.3| 555|Caenorhabditis elegans Hypothetical
protein F27E11.2a protein.
Length = 555
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = -1
Query: 397 VRPYRFMFRHIFAYILVNIFLFAY*VY*YKYKHSLL--THFFWECFFFNLI 251
+RPY + + ++ + FL A ++ Y+ L+ T FFW C+ NLI
Sbjct: 43 IRPYFGIGSLLIFLVVYHGFLVAAGIHNYQKAAPLIYVTLFFWICYLLNLI 93
>Z82078-7|CAB04947.3| 801|Caenorhabditis elegans Hypothetical
protein W09D6.6 protein.
Length = 801
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -1
Query: 367 IFAYILVNIFLFAY*VY*YKYKHSLLTHFFWECFFFNL 254
IFA I +IF F + Y + Y H LL + FF+ L
Sbjct: 79 IFAVICQSIFYFCFTFYFHPYTHLLLAFCVSKLFFWIL 116
>U21319-7|AAL16307.1| 469|Caenorhabditis elegans Hypothetical
protein C30G12.1 protein.
Length = 469
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +2
Query: 125 KINKTKDNVNVFLNK*NIYINLARIPTNGASTKAIDNIIMDPNEIKKKTFP 277
K K K+ NVF K N I + T ++ AI P +I +T P
Sbjct: 274 KPEKKKEVFNVFTTKTNPQITTTTMTTTTRTSTAIPTTTTTPRQISLQTIP 324
>AF497514-1|AAM33381.1| 801|Caenorhabditis elegans heavy metal
tolerance factor 1 protein.
Length = 801
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -1
Query: 367 IFAYILVNIFLFAY*VY*YKYKHSLLTHFFWECFFFNL 254
IFA I +IF F + Y + Y H LL + FF+ L
Sbjct: 79 IFAVICQSIFYFCFTFYFHPYTHLLLAFCVSKLFFWIL 116
>AF497513-1|AAM33380.1| 801|Caenorhabditis elegans heavy metal
tolerance factor 1 protein.
Length = 801
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -1
Query: 367 IFAYILVNIFLFAY*VY*YKYKHSLLTHFFWECFFFNL 254
IFA I +IF F + Y + Y H LL + FF+ L
Sbjct: 79 IFAVICQSIFYFCFTFYFHPYTHLLLAFCVSKLFFWIL 116
>AF490977-1|AAQ06435.1| 801|Caenorhabditis elegans ABC6 protein
protein.
Length = 801
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -1
Query: 367 IFAYILVNIFLFAY*VY*YKYKHSLLTHFFWECFFFNL 254
IFA I +IF F + Y + Y H LL + FF+ L
Sbjct: 79 IFAVICQSIFYFCFTFYFHPYTHLLLAFCVSKLFFWIL 116
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,165,047
Number of Sequences: 27780
Number of extensions: 214387
Number of successful extensions: 421
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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