Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0898
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    29   0.84 
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc...    26   4.5  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   4.5  
SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc...    26   5.9  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    25   7.8  

>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 330 NCSELHIKRSV*CLLSILNLSFVGIENFHFFLHSGS 437
           NC+ +H+KR+    L  +N SF+  E  ++    GS
Sbjct: 308 NCTRVHLKRTSPSELDYINASFIKTETSNYIACQGS 343


>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 536

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/49 (22%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -3

Query: 505 MILHLIA*CVQKSKIHYIIMSNSL--PLCKKKWKFSIPTKLKFKIDNRH 365
           + L+ I+   +   +H +++   +  P  K+ W+F+    L F ++N H
Sbjct: 24  IFLNKISALPESENVHCLLLKQLIGSPQLKQTWQFNFCVDLNFLLENMH 72


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 474 CTHYAIKCKIMCFE 515
           C+HY   CK+ CF+
Sbjct: 142 CSHYMRNCKVQCFD 155


>SPCC1442.08c |cox12||cytochrome c oxidase subunit
           VIb|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 83

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 569 RFPHTNLTSHKCQRYIISFK 510
           RFP+TN T H  Q YI  F+
Sbjct: 20  RFPNTNQTKHCFQSYIDYFR 39


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 695 SNHGTLLGITKHFLPYHGDYWIGPATTSDF 606
           +N   +LGI+  +LP+    WIGP    +F
Sbjct: 214 ANRSLVLGIS--YLPFVVTIWIGPRVAQEF 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,806,493
Number of Sequences: 5004
Number of extensions: 56140
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)