Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0898
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0847 + 32411521-32411619,32411737-32411851,32412292-324123...    31   0.66 
01_05_0290 - 20487105-20487113,20487171-20487213,20488336-204884...    29   3.5  

>01_06_0847 +
           32411521-32411619,32411737-32411851,32412292-32412375,
           32412430-32413478,32414690-32416371,32416477-32416586,
           32417634-32418430,32418839-32418951,32419147-32419194,
           32419425-32419652,32419732-32419829,32419967-32420019
          Length = 1491

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = -2

Query: 599 GLKNQLMSTIRFPHTNLTSHKCQRYIISFKTHDFTFNSIMCTEVKNTLHNYVKLTPAV*E 420
           G K +  + +    T+  S K +R  +  K HD T N I+C++ ++ +     + P V E
Sbjct: 613 GDKKRKRTKMSLKSTDCLSSKHKRLHLEMKAHDSTSNGILCSDDRSRVQQGSSIMPVVNE 672


>01_05_0290 -
           20487105-20487113,20487171-20487213,20488336-20488412,
           20489096-20489163,20489266-20489456,20490687-20490798,
           20490892-20490943,20491984-20492076,20493065-20493211,
           20493381-20493410,20493764-20493862,20495188-20495322,
           20495420-20495498,20495989-20496064,20496345-20496423,
           20496513-20496547,20497185-20497259,20497405-20497804
          Length = 599

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 644 GDYWIGPATTSDFSIGLKNQLMSTIRFPHTNLTSHK 537
           GDY +        + G +N+L    RF H+N TSHK
Sbjct: 119 GDYVVAQRNPDADAPGGRNRLRINPRFLHSNATSHK 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,065,698
Number of Sequences: 37544
Number of extensions: 313014
Number of successful extensions: 476
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)