Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0898
         (696 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118292-1|AAM48321.1|  262|Drosophila melanogaster GH01164p pro...    29   6.0  
AE014297-1053|AAF54462.1|  262|Drosophila melanogaster CG16904-P...    29   6.0  
AY118473-1|AAM49842.1| 1162|Drosophila melanogaster GM14375p pro...    29   8.0  
AE014296-2647|AAF49530.2| 1106|Drosophila melanogaster CG16838-P...    29   8.0  
AE014296-2646|AAN11762.2| 1162|Drosophila melanogaster CG16838-P...    29   8.0  

>AY118292-1|AAM48321.1|  262|Drosophila melanogaster GH01164p
           protein.
          Length = 262

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 12  SVSQPLPSDHVLLDTKTTLVTYF*LNKVL-YNDSIIYCFIK 131
           S  Q LP DH L  T+ TL   + LNKVL   D+I +   K
Sbjct: 86  SCMQVLPQDHELKSTERTLSYMYHLNKVLDLMDTIFFVLRK 126


>AE014297-1053|AAF54462.1|  262|Drosophila melanogaster CG16904-PA
           protein.
          Length = 262

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 12  SVSQPLPSDHVLLDTKTTLVTYF*LNKVL-YNDSIIYCFIK 131
           S  Q LP DH L  T+ TL   + LNKVL   D+I +   K
Sbjct: 86  SCMQVLPQDHELKSTERTLSYMYHLNKVLDLMDTIFFVLRK 126


>AY118473-1|AAM49842.1| 1162|Drosophila melanogaster GM14375p
           protein.
          Length = 1162

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 636 LDWASYHQRFFNWIKKPINVNY*VP 562
           +D +  HQRFF +   P NV Y +P
Sbjct: 925 VDGSRIHQRFFEFFTSPQNVQYRIP 949


>AE014296-2647|AAF49530.2| 1106|Drosophila melanogaster CG16838-PD,
           isoform D protein.
          Length = 1106

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 636 LDWASYHQRFFNWIKKPINVNY*VP 562
           +D +  HQRFF +   P NV Y +P
Sbjct: 869 VDGSRIHQRFFEFFTSPQNVQYRIP 893


>AE014296-2646|AAN11762.2| 1162|Drosophila melanogaster CG16838-PC,
           isoform C protein.
          Length = 1162

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 636 LDWASYHQRFFNWIKKPINVNY*VP 562
           +D +  HQRFF +   P NV Y +P
Sbjct: 925 VDGSRIHQRFFEFFTSPQNVQYRIP 949


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,313,584
Number of Sequences: 53049
Number of extensions: 566103
Number of successful extensions: 988
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3046624548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)