Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0898
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56961-3|AAK39294.1|  634|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z68104-8|CAA92117.1| 1077|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z66563-4|CAA91470.1| 1077|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AF435953-1|AAL30829.1| 1077|Caenorhabditis elegans eIF2 alpha ki...    29   4.2  
AF193341-1|AAF61201.1| 1077|Caenorhabditis elegans eukaryotic tr...    29   4.2  

>U56961-3|AAK39294.1|  634|Caenorhabditis elegans Hypothetical
           protein T19D7.4 protein.
          Length = 634

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -2

Query: 593 KNQLMSTIRFPHTNLTSHKCQRYIIS-FKTHDFTFNSIMCT-EVKNTLHNYVKLT 435
           KNQL +T++  H  L S  C R I + FK+      S++ T E K  L+ + + T
Sbjct: 292 KNQLKNTLKGNHYGLVSQVCDRKIFTLFKSIKIFIKSLIQTCEQKTPLYVFAQTT 346


>Z68104-8|CAA92117.1| 1077|Caenorhabditis elegans Hypothetical
           protein F46C3.1 protein.
          Length = 1077

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = -2

Query: 230 FSF*MKKRLYNMKAIEMSKLEKFTSVRTSNYVTLNKTINYG 108
           FS   KKRL   + I  S LE FTS R +N   + K I +G
Sbjct: 574 FSNDEKKRLLRNRTISRSSLEGFTS-RFANEFEVKKVIGHG 613


>Z66563-4|CAA91470.1| 1077|Caenorhabditis elegans Hypothetical
           protein F46C3.1 protein.
          Length = 1077

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = -2

Query: 230 FSF*MKKRLYNMKAIEMSKLEKFTSVRTSNYVTLNKTINYG 108
           FS   KKRL   + I  S LE FTS R +N   + K I +G
Sbjct: 574 FSNDEKKRLLRNRTISRSSLEGFTS-RFANEFEVKKVIGHG 613


>AF435953-1|AAL30829.1| 1077|Caenorhabditis elegans eIF2 alpha
           kinase protein.
          Length = 1077

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = -2

Query: 230 FSF*MKKRLYNMKAIEMSKLEKFTSVRTSNYVTLNKTINYG 108
           FS   KKRL   + I  S LE FTS R +N   + K I +G
Sbjct: 574 FSNDEKKRLLRNRTISRSSLEGFTS-RFANEFEVKKVIGHG 613


>AF193341-1|AAF61201.1| 1077|Caenorhabditis elegans eukaryotic
           translation initiationfactor 2 alpha kinase PEK protein.
          Length = 1077

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = -2

Query: 230 FSF*MKKRLYNMKAIEMSKLEKFTSVRTSNYVTLNKTINYG 108
           FS   KKRL   + I  S LE FTS R +N   + K I +G
Sbjct: 574 FSNDEKKRLLRNRTISRSSLEGFTS-RFANEFEVKKVIGHG 613


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,476,871
Number of Sequences: 27780
Number of extensions: 312657
Number of successful extensions: 574
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)