Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0898
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    26   0.39 
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    23   2.8  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    23   2.8  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   2.8  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   2.8  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    22   4.8  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   4.8  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   4.8  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -2

Query: 590 NQLMSTIRFPHTNLTSHKCQRYIISFKTHDFTFNSIMCTEVKNTLHNY 447
           +QL+  +  PH   T+ K +   ++ +  D T   +   + KNTL  Y
Sbjct: 167 SQLLKQVEIPHDVATTGKGELVSLTVQAMDSTNTMVYMVDNKNTLIIY 214


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 278 NSRSPNYVCHIKKTNHFSF*MKKRLYNMKAIE 183
           +S S NY+ +I   N+ +   KK  YN+  IE
Sbjct: 83  SSLSNNYISNISNYNNNNNYNKKLYYNINYIE 114


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 278 NSRSPNYVCHIKKTNHFSF*MKKRLYNMKAIE 183
           +S S NY+ +I   N+ +   KK  YN+  IE
Sbjct: 83  SSLSNNYISNISNYNNDNNYNKKLYYNINYIE 114


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 278 NSRSPNYVCHIKKTNHFSF*MKKRLYNMKAIE 183
           +S S NY+ +I   N+ +   KK  YN+  IE
Sbjct: 321 SSLSNNYISNISNYNNNNNYNKKLYYNINYIE 352


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 623 ATTSDFSIGLKNQLMST 573
           AT +DFS+G+KN  +S+
Sbjct: 206 ATPTDFSMGVKNNHVSS 222


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 640 SPW*GKKCLVIPKRVPWFE 696
           S W G   L +  ++PWF+
Sbjct: 121 SGWHGDNMLEVSSKMPWFK 139


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 640 SPW*GKKCLVIPKRVPWFE 696
           S W G   L +  ++PWF+
Sbjct: 137 SGWHGDNMLEVSSKMPWFK 155


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 640 SPW*GKKCLVIPKRVPWFE 696
           S W G   L +  ++PWF+
Sbjct: 194 SGWHGDNMLEVSSKMPWFK 212


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,981
Number of Sequences: 438
Number of extensions: 3870
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)