Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0897
         (693 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q23629 Cluster: Putative uncharacterized protein; n=3; ...    45   0.002
UniRef50_Q96HY7 Cluster: Dehydrogenase E1 and transketolase doma...    44   0.005
UniRef50_Q4RSE1 Cluster: Chromosome 13 SCAF15000, whole genome s...    41   0.033
UniRef50_UPI00006CD2E0 Cluster: 2-oxoglutarate dehydrogenase, E1...    33   5.0  
UniRef50_Q1D9A1 Cluster: Putative uncharacterized protein; n=1; ...    33   5.0  
UniRef50_P34619 Cluster: Sop-2-related protein 1; n=2; Caenorhab...    33   8.8  

>UniRef50_Q23629 Cluster: Putative uncharacterized protein; n=3;
           Bilateria|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 911

 Score = 45.2 bits (102), Expect = 0.002
 Identities = 23/48 (47%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
 Frame = +2

Query: 248 VELLSGLLQCPPVKIFHKFTGRPEFPDEANAACDISTHL--SKDYFAS 385
           + LL+ L+  PPV +F K  GR EFP+ A+AA D+ +HL  S DY  S
Sbjct: 217 LNLLTQLMDFPPVHMFRKIKGRAEFPESADAAGDVLSHLVSSFDYKGS 264


>UniRef50_Q96HY7 Cluster: Dehydrogenase E1 and transketolase
           domain-containing protein 1; n=39; Eumetazoa|Rep:
           Dehydrogenase E1 and transketolase domain-containing
           protein 1 - Homo sapiens (Human)
          Length = 919

 Score = 43.6 bits (98), Expect = 0.005
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
 Frame = +2

Query: 248 VELLSGLLQCPPVKIFHKFTGRPEFPDEANAACDISTHLSKD---YFASSH 391
           + LL+GLLQ PP  +F K  G  EFP+  +A  D+ +HL+     YF + H
Sbjct: 227 LNLLTGLLQFPPELMFRKMRGLSEFPENFSATGDVLSHLTSSVDLYFGAHH 277


>UniRef50_Q4RSE1 Cluster: Chromosome 13 SCAF15000, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 13 SCAF15000, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 974

 Score = 40.7 bits (91), Expect = 0.033
 Identities = 18/40 (45%), Positives = 26/40 (65%)
 Frame = +2

Query: 248 VELLSGLLQCPPVKIFHKFTGRPEFPDEANAACDISTHLS 367
           + LL+GLL+ PP  +F K  G  EFPD + A  D+ +HL+
Sbjct: 228 LNLLTGLLKFPPELMFRKMRGLSEFPDSSPAIGDVLSHLT 267


>UniRef50_UPI00006CD2E0 Cluster: 2-oxoglutarate dehydrogenase, E1
           component family protein; n=1; Tetrahymena thermophila
           SB210|Rep: 2-oxoglutarate dehydrogenase, E1 component
           family protein - Tetrahymena thermophila SB210
          Length = 1054

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 16/39 (41%), Positives = 26/39 (66%)
 Frame = +3

Query: 204 ERIEQVILGMAHRGKLNSSVGYYSVLRSRSSTSLQEDQN 320
           ++IE +++GM HRG+LN+    YSVL+  +   L E Q+
Sbjct: 326 KKIENIVIGMPHRGRLNT---LYSVLKKPAVNILAEFQD 361


>UniRef50_Q1D9A1 Cluster: Putative uncharacterized protein; n=1;
           Myxococcus xanthus DK 1622|Rep: Putative uncharacterized
           protein - Myxococcus xanthus (strain DK 1622)
          Length = 325

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = +1

Query: 259 QWAITVSSGQDLPQVYRKTRISGRSKRSL*YFNPSQ*GLLRFFASY 396
           +W +  S+G+D P+VYR +R+ G   R   +  P++  L  F+ ++
Sbjct: 181 RWYLVASTGEDEPRVYRGSRVDGARIRPETFIRPARFDLPAFWKAW 226


>UniRef50_P34619 Cluster: Sop-2-related protein 1; n=2;
           Caenorhabditis elegans|Rep: Sop-2-related protein 1 -
           Caenorhabditis elegans
          Length = 1000

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 166 WWFEVFFSTGQYTFSKIFKSANEYRIVCNRR 74
           W F  +  +G+   S   K+ NEYR++CN R
Sbjct: 799 WHFPPYEKSGRLNVSNTIKAINEYRLLCNSR 829


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 630,764,753
Number of Sequences: 1657284
Number of extensions: 12135847
Number of successful extensions: 30034
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 29151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30032
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)