Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0897
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    29   0.84 
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    27   3.4  
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    26   4.5  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    26   5.9  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   5.9  
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    26   5.9  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    25   7.9  

>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 204 ERIEQVILGMAHRGKLN 254
           E I  +++GMAHRG+LN
Sbjct: 293 EGISNIVIGMAHRGRLN 309


>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 23  IYIQRDPAIFISFIWKISPITYNTIFISGFKNF*KSILA 139
           ++IQ  P I + FI +   I   T FI  + NF  SILA
Sbjct: 124 LFIQNPPCIPVFFIAQCLHILRGTKFIIDWHNFGYSILA 162


>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 90  IRYSLADLKIFEKVYW 137
           ++Y L+ +K+F KVYW
Sbjct: 94  LKYVLSKMKVFPKVYW 109


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
            Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = +3

Query: 141  VEKKTSNHQSNAYLKHCLLFTERIEQVILGMAHRGKLNSSVGYYSVLRSR 290
            VE KT+N   N    H   F   IEQ +     RG   SS+G  S+ +S+
Sbjct: 1205 VESKTNNILEN----HTEAFL--IEQAVSSFLERGVKQSSIGIISIYKSQ 1248


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = -3

Query: 238 WAIPKMTCSILSVNKR-QCFKYAFDWWFEVFFSTGQYTFSKIFKSANEY 95
           W  P   C   +  +R  CF+ +F     V  +TG  TFS  F   N Y
Sbjct: 347 WNCPM--CGFSNFQRRTSCFRCSFPGPTHVSAATGSNTFSPDFPYGNSY 393


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +3

Query: 123 EKVYWPVEKKTSNHQSNAYL 182
           E+V+ P++KKT+N +  AY+
Sbjct: 350 EQVHMPIDKKTNNPKGFAYI 369


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
 Frame = +3

Query: 396 FPIFVRSFQWRDCYLFPLLLDFLSTYFFSIS--LRAFCLLLP 515
           FP F R+F W    L+P   +      F +    R F LL P
Sbjct: 554 FPCFFRTFIWTTYKLYPFSFEKKEAMAFLLDHPRRCFTLLFP 595


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,750,436
Number of Sequences: 5004
Number of extensions: 56937
Number of successful extensions: 164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)