Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0897
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847...    33   0.28 
06_01_0917 - 7077934-7080339                                           29   3.5  
04_03_0265 - 13638816-13641348,13641432-13641490                       28   8.1  

>01_06_0083 +
           26283492-26283756,26284255-26284467,26284620-26284771,
           26284884-26285157,26285277-26285485
          Length = 370

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
 Frame = +2

Query: 173 CVFKTLPF--VYRKNRTGHLRNGP*REVELLSGLLQCPPVKIFHKFTGRPEFPDEANAAC 346
           C FK  PF   Y K+ +G + +G    ++  +  LQ P V        R +FP  AN A 
Sbjct: 59  CPFKEPPFGMTYFKHPSGRISDGR-VVIDFYAQALQLPFVPPSLPEKDRGQFPHGANFAV 117

Query: 347 DISTHLSKDYF-ASSHLIP 400
             ST L  +YF   +H +P
Sbjct: 118 LASTALPPEYFRRRNHTVP 136


>06_01_0917 - 7077934-7080339
          Length = 801

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 6   RAGPLASTSNVTQRFLYLLFGKYRLLHTIRYSLAD 110
           R+ PLA  S + +R L  L G Y+L H     LAD
Sbjct: 36  RSAPLAKRSVIYERALRALPGSYKLWHAYLTELAD 70


>04_03_0265 - 13638816-13641348,13641432-13641490
          Length = 863

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -1

Query: 363 RWVEISQAAFASSGNSGLPVNLWK--ILTGGHCNSPLRSSTSL 241
           +W  +S        +   P+   K  I TGG C  PL+S++SL
Sbjct: 328 KWTVVSDVIKVFPDDCAFPMACGKYGICTGGQCTCPLQSNSSL 370


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,035,540
Number of Sequences: 37544
Number of extensions: 302945
Number of successful extensions: 620
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)