Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0897
         (693 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24032| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)                   29   2.7  
SB_36200| Best HMM Match : E1_dh (HMM E-Value=5.1e-40)                 29   2.7  
SB_25719| Best HMM Match : zf-AN1 (HMM E-Value=4.2)                    29   4.7  
SB_28985| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_12486| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2.9)             28   8.3  

>SB_24032| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 360

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = -3

Query: 226 KMTCSILSVNKRQCFKYAFDWWFEVFFS---TGQYTFSKIFKSANEYR 92
           KMTCSI    +R  F Y+      + FS   T  Y +SK+FK+   +R
Sbjct: 171 KMTCSIEFYTRRADFLYSGFLVLVIVFSPFVTIIYCYSKVFKAVESHR 218


>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
          Length = 1213

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 435 YLFPLLLDFLSTYFFSISLRAFCLLLPKNRARAFC-LFIT*RNKSTSVMLRL 587
           Y+ P  + FL      +S R FC+   ++  RAF  LF+      TSV L L
Sbjct: 316 YVLPTYILFLCGVVIVLSRRRFCVFSKRSALRAFATLFLVSYTTFTSVSLEL 367


>SB_36200| Best HMM Match : E1_dh (HMM E-Value=5.1e-40)
          Length = 382

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = +3

Query: 210 IEQVILGMAHRGKLN 254
           +EQ ++GMAHRG+LN
Sbjct: 81  VEQFVMGMAHRGRLN 95


>SB_25719| Best HMM Match : zf-AN1 (HMM E-Value=4.2)
          Length = 189

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 10/95 (10%)
 Frame = +3

Query: 126 KVYWPVEKKTSNHQS--NAYLKHCLLFTERIEQVILGMAHRGKLNSSVGYYSVLRSRSST 299
           K +W + K+TSN QS  +   +  L    R+E+V L +  +GK   S       R R   
Sbjct: 31  KKHWQLVKRTSNQQSKPSDVEQRSLRKANRVEKVFLELDDKGKKGWSRSICMYCRQRVDL 90

Query: 300 SL--------QEDQNFRTKQTQLVIFQPISVRTTS 380
            L         E     T  +  V FQP +  T++
Sbjct: 91  ELGNKRMKTSHESCRDETASSSSVFFQPETSETSA 125


>SB_28985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 202

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 39  TQRFLYLLFGKYRLLHTIRYSLADLKIFEKVYWPVEKKTSNH 164
           T  F + L  K+R+LH I  ++A  K ++K +  V+ + S +
Sbjct: 21  TAVFAFFLLIKFRILHRILSTIASTKSYKKWFAQVQSQWSQY 62


>SB_12486| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2.9)
          Length = 492

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +3

Query: 345 VIFQPISVRTTSLLRILFPIFVRSFQWRDCYLFPLLLDFLSTYFFSISLRAFCLLLP 515
           +I Q  S+    + R  +P+F   F       FP +  +    FF+I  R F L LP
Sbjct: 186 MITQCFSLCLPGVFRYFYPVFFAMFTRCFSLCFPGVYRYDYPVFFAIFTRCFSLYLP 242


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,875,064
Number of Sequences: 59808
Number of extensions: 358829
Number of successful extensions: 808
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)