Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0897
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14940.1 68417.m02294 copper amine oxidase, putative highly s...    33   0.24 
At4g03360.1 68417.m00458 ubiquitin family protein contains INTER...    32   0.41 
At4g02950.1 68417.m00402 ubiquitin family protein contains INTER...    32   0.41 
At1g33610.1 68414.m04160 leucine-rich repeat family protein cont...    29   3.9  
At3g55410.1 68416.m06154 2-oxoglutarate dehydrogenase E1 compone...    28   6.8  

>At4g14940.1 68417.m02294 copper amine oxidase, putative highly
           similar to copper amine oxidase [Arabidopsis thaliana]
           gi|2654118|gb|AAB87690
          Length = 650

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 17/66 (25%), Positives = 37/66 (56%)
 Frame = +3

Query: 126 KVYWPVEKKTSNHQSNAYLKHCLLFTERIEQVILGMAHRGKLNSSVGYYSVLRSRSSTSL 305
           K YW V K+T+  +++  ++   L ++ +E +I+    + K+ ++VGY  +     +TSL
Sbjct: 493 KSYWTVVKETAKTEADGRVR---LGSDPVELLIVNPNKKTKIGNTVGYRLIPEHLQATSL 549

Query: 306 QEDQNF 323
             D ++
Sbjct: 550 LTDDDY 555


>At4g03360.1 68417.m00458 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 284

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 204 ERIEQVILGMAHRGKLNSSVGYYSVLRSRSSTSLQEDQNFRT 329
           E + + ++ M  RG+LN   G Y ++       L EDQ+F T
Sbjct: 222 EELRKELVKMQERGELNLPQGMYYLIHKHKQAVLHEDQSFLT 263


>At4g02950.1 68417.m00402 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 318

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 204 ERIEQVILGMAHRGKLNSSVGYYSVLRSRSSTSLQEDQNFRT 329
           E + + ++ M  RG+LN   G Y ++       L EDQ+F T
Sbjct: 256 EELRKELVKMQERGELNLPQGMYYLIHKHKQAVLHEDQSFLT 297


>At1g33610.1 68414.m04160 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611
          Length = 907

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +3

Query: 12  GPLA-STSNVTQRFLYLLFGKYRLLHTIRYSLADLKIFEKV 131
           GP+  S SN+T R  YL+FG   L  TI   +A+LK+ + +
Sbjct: 165 GPIPNSISNLT-RLSYLIFGGNLLTGTIPLGIANLKLMQNL 204


>At3g55410.1 68416.m06154 2-oxoglutarate dehydrogenase E1 component,
           putative / oxoglutarate decarboxylase, putative /
           alpha-ketoglutaric dehydrogenase, putative similar to
           SP|P20967 2-oxoglutarate dehydrogenase E1 component,
           mitochondrial precursor (EC 1.2.4.2)
           (Alpha-ketoglutarate dehydrogenase) {Saccharomyces
           cerevisiae}; contains Pfam profiles PF02779:
           Transketolase, pyridine binding domain, PF00676:
           Dehydrogenase E1 component
          Length = 1017

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 8/15 (53%), Positives = 14/15 (93%)
 Frame = +3

Query: 210 IEQVILGMAHRGKLN 254
           +E +++GM+HRG+LN
Sbjct: 287 VESIVIGMSHRGRLN 301


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,779,636
Number of Sequences: 28952
Number of extensions: 275000
Number of successful extensions: 672
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)