Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0896
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    27   2.0  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    27   3.4  

>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = -1

Query: 203  YLLFLYEHLVQVNENHVA*FLTSKLISLRKSFYNT-SFLWISFLWSRW-PPKRLCPQKMC 30
            YL  LYEH+V   E+H    +   +I  ++ F  T   L+ SF    W      CP  MC
Sbjct: 1074 YLTNLYEHIVLKAESHQICIICRDII--KQGFITTCGHLYCSFCLEAWLKHSSSCP--MC 1129

Query: 29   K 27
            K
Sbjct: 1130 K 1130


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +2

Query: 80  KISTEKMYYKNSCVKKLTLRLEIKQHDFHLLVLNAHIKTINIHFY 214
           KI  + +  K SC+ K T R+ I   D  +++LN+ ++ I   FY
Sbjct: 34  KILHDSVGNKISCIGKSTKRIAIGTLDGRIVILNSRLQLIR-DFY 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,007,006
Number of Sequences: 5004
Number of extensions: 62280
Number of successful extensions: 144
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)