Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0896
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0381 + 9573651-9574174,9574271-9574583                           29   2.7  
07_03_0468 - 18484386-18486377,18486741-18486827                       29   3.5  
02_02_0385 - 9588227-9589138                                           29   3.5  
02_02_0382 + 9577556-9578467                                           29   3.5  
02_02_0386 - 9599403-9599715,9599830-9600359                           28   6.2  

>02_02_0381 + 9573651-9574174,9574271-9574583
          Length = 278

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 98  MYYKNSCVKKLTLRLEIKQHDFHLLVLNAHIKT 196
           MY +  CVKK  +R  I  HD+  LVL  ++ T
Sbjct: 172 MYQRVPCVKKGGVRFTINGHDYFNLVLVTNVAT 204


>07_03_0468 - 18484386-18486377,18486741-18486827
          Length = 692

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 4   LRPTKVCFLHIFCGHSLFGGHRD 72
           +RP+   F HI CG+S  G HR+
Sbjct: 569 VRPSLHTFCHILCGYSSLGMHRE 591


>02_02_0385 - 9588227-9589138
          Length = 303

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 101 YYKNSCVKKLTLRLEIKQHDFHLLVLNAHI 190
           +Y+  CVKK  LR  I  HD+  LVL  ++
Sbjct: 198 FYRVPCVKKGGLRFTINGHDYFQLVLVTNV 227


>02_02_0382 + 9577556-9578467
          Length = 303

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 101 YYKNSCVKKLTLRLEIKQHDFHLLVLNAHI 190
           +Y+  CVKK  LR  I  HD+  LVL  ++
Sbjct: 198 FYRVPCVKKGGLRFTINGHDYFQLVLVTNV 227


>02_02_0386 - 9599403-9599715,9599830-9600359
          Length = 280

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 98  MYYKNSCVKKLTLRLEIKQHDFHLLVLNAHIKTINI 205
           +Y +  CVKK  +R  I  HD+  LVL  ++ T  +
Sbjct: 174 IYQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTGL 209


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,463,462
Number of Sequences: 37544
Number of extensions: 320908
Number of successful extensions: 629
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)