Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0896
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55552| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_41537| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_27262| Best HMM Match : Toxin_1 (HMM E-Value=4.1)                   28   8.4  
SB_18310| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_55552| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 9/29 (31%), Positives = 21/29 (72%)
 Frame = +1

Query: 265 YIYVCFGIKNIFSLALESKQQNIKRRNGH 351
           YI+  +G+KNIF ++ ++ ++ I++ + H
Sbjct: 117 YIFQSYGLKNIFLISPQTSEERIRKIDNH 145


>SB_41537| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 71

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -3

Query: 480 TINPINLWLHEMESFLWTR 424
           TI P +LW+HE ES+L T+
Sbjct: 42  TILPSSLWIHERESWLQTK 60


>SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4538

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 13/71 (18%)
 Frame = +2

Query: 77  GKISTEKMYYKNSCVKKLTLRLEIKQHDF-------------HLLVLNAHIKTINIHFYR 217
           G +ST+    KNS V+K T+   ++  D+             + +V NA  K+I   F R
Sbjct: 599 GFVSTQGQLDKNSWVQKFTISYRLEDQDWEPYGQAFSGNIDANTVVKNALNKSIEARFIR 658

Query: 218 *YLHVYNWNRK 250
             +H  +WNR+
Sbjct: 659 --IHPVSWNRR 667


>SB_27262| Best HMM Match : Toxin_1 (HMM E-Value=4.1)
          Length = 196

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +1

Query: 43 GHSLFGGHRDHRKDIHR 93
          G+S FG H+ HRK++H+
Sbjct: 33 GNSHFGSHKKHRKNLHQ 49


>SB_18310| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 209

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 10  PTKVCFLHIFCGHSLFGGHRDHRKD 84
           PTK+ F ++ CG      HRD R D
Sbjct: 107 PTKILFTNLSCGFHARNRHRDKRVD 131


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,235,062
Number of Sequences: 59808
Number of extensions: 417734
Number of successful extensions: 903
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)