Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0896
         (698 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT021333-1|AAX33481.1| 1390|Drosophila melanogaster RE02061p pro...    30   3.5  
AY229991-1|AAP44004.1| 1390|Drosophila melanogaster contactin pr...    30   3.5  
AE014297-73|AAF52137.2| 1390|Drosophila melanogaster CG1084-PA p...    30   3.5  

>BT021333-1|AAX33481.1| 1390|Drosophila melanogaster RE02061p
           protein.
          Length = 1390

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = -3

Query: 402 FIRPH*VYVFNCWHH*VVAIPAFDILLFRFQCE*KYIFYSETHINVK 262
           ++R   VY F+      + +PA++I L  F CE K + YS  ++N+K
Sbjct: 294 YVRDRVVYAFSKKRDRWMFMPAYEIELNLFICESK-VLYSSDNVNIK 339


>AY229991-1|AAP44004.1| 1390|Drosophila melanogaster contactin
           protein.
          Length = 1390

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = -3

Query: 402 FIRPH*VYVFNCWHH*VVAIPAFDILLFRFQCE*KYIFYSETHINVK 262
           ++R   VY F+      + +PA++I L  F CE K + YS  ++N+K
Sbjct: 294 YVRDRVVYAFSKKRDRWMFMPAYEIELNLFICESK-VLYSSDNVNIK 339


>AE014297-73|AAF52137.2| 1390|Drosophila melanogaster CG1084-PA
           protein.
          Length = 1390

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = -3

Query: 402 FIRPH*VYVFNCWHH*VVAIPAFDILLFRFQCE*KYIFYSETHINVK 262
           ++R   VY F+      + +PA++I L  F CE K + YS  ++N+K
Sbjct: 294 YVRDRVVYAFSKKRDRWMFMPAYEIELNLFICESK-VLYSSDNVNIK 339


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,372,995
Number of Sequences: 53049
Number of extensions: 594411
Number of successful extensions: 1093
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)