Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0896
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    24   1.2  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   6.4  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   6.4  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   6.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   6.4  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 50  VFSVAIGTTGKISTEKMYYKNSCVKKLTLRLEIKQHD 160
           V SV IG +    T +  YKN  +  LT  LEIK ++
Sbjct: 72  VDSVKIGESQGSVTLRQEYKNIKLYGLTKNLEIKNYN 108


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -2

Query: 673 FWMGRLNIQKNLSLWNCYKTKGIM 602
           FW+    +   L +W  Y T+G +
Sbjct: 180 FWVTPFTVLPLLKVWGRYTTEGFL 203


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +1

Query: 118 RKEINFEVRNQAT*FSFTCTKCSY 189
           +  + + +RN      F C KCSY
Sbjct: 1   KHHLEYHLRNHFGSKPFKCEKCSY 24


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -1

Query: 377 FLTVGITK*WPFRRLIFCCFDSSASE 300
           +L V  +K W   R   CC +S   E
Sbjct: 60  YLQVSGSKIWQMERSCMCCQESGERE 85


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -2

Query: 673 FWMGRLNIQKNLSLWNCYKTKGIM 602
           FW+    +   L +W  Y T+G +
Sbjct: 180 FWVTPFTVLPLLKVWGRYTTEGFL 203


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,467
Number of Sequences: 438
Number of extensions: 4596
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)