Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0895
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    40   3e-04
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    35   0.013
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    30   0.28 
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    30   0.36 
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    30   0.36 
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    27   2.6  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    27   3.4  
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom...    26   4.5  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    26   5.9  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    26   5.9  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    25   7.8  

>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 23/79 (29%), Positives = 41/79 (51%)
 Frame = +3

Query: 240 GYSSRIQDKVIEELDQIFGDSDRPVTFQDTLEMKYLERCLMETLRLYPPVPIIARQVNQE 419
           G    I + + EE  ++ G++   + F    +M  L   + ETLRL+PP+    R+V ++
Sbjct: 305 GSKPEIIEMLWEEQKRVVGEN-LELKFDQYKDMPLLNYVIQETLRLHPPIHSHMRKVKRD 363

Query: 420 ITLPSNGKKIPAGTTLVIA 476
           + +P +   IPA   L+ A
Sbjct: 364 LPVPGSKIVIPANNYLLAA 382


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 34.7 bits (76), Expect = 0.013
 Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 1/127 (0%)
 Frame = +3

Query: 255 IQDKVIEELDQIF-GDSDRPVTFQDTLEMKYLERCLMETLRLYPPVPIIARQVNQEITLP 431
           +  KV EE  +I  GD D P++     +M Y    + E LRL PPV ++  +V +   + 
Sbjct: 341 VLQKVREEQLRIRKGDIDVPLSLDLMEKMTYTRAVVKECLRLRPPVLMVPYRVKKAFPIT 400

Query: 432 SNGKKIPAGTTLVIATYKLHRRPDVYQIQTNLTLTTSFRNVPPTDIIMRSCLFQLGPRSC 611
            +   +P    ++   Y       VY             N           +F  GP  C
Sbjct: 401 PD-YTVPKDAMVIPTLYGALHDSKVYPEPETFNPDRWAPNGLAEQSPKNWMVFGNGPHVC 459

Query: 612 VGRKYAM 632
           +G++YA+
Sbjct: 460 LGQRYAV 466


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +3

Query: 414 QEITLPSNGKKIPAGTTLVIATYKLHRRPDVYQIQTNLTLTTSFRNVPPTDI--IMRSCL 587
           +++   +N +K+ AG   +     + RR  +     +  +  +FRN+P  +I  + R  L
Sbjct: 178 RDVVKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDAGIVKAFRNIPGVEIVNVRRLNL 237

Query: 588 FQLGPRSCVGR 620
            QL P   +GR
Sbjct: 238 LQLAPGGHLGR 248


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +3

Query: 414 QEITLPSNGKKIPAGTTLVIATYKLHRRPDVYQIQTNLTLTTSFRNVPPTDI--IMRSCL 587
           +++   +N +K+ AG   +     + RR  +     +  +  +FRN+P  +I  + R  L
Sbjct: 178 RDVIKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDTGIVKAFRNIPGVEIVNVRRLNL 237

Query: 588 FQLGPRSCVGR 620
            QL P   +GR
Sbjct: 238 LQLAPGGHLGR 248


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +1

Query: 112 LLLESSQSGVAISDEEIKEQVDTIMFEGH--XXTAAGSSFFLSMMG 243
           LLL    +G+A  DE + E V TI+F  +    +AAG S  L M+G
Sbjct: 460 LLLGIGLTGMASRDETLYESVKTILFNDNAVAGSAAGISMGLIMLG 505


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 602 WSQLKKARTHNNVCWRNVPEGSCQGQICLDLV 507
           +S  K  ++H N  + N   G C+  +C DL+
Sbjct: 310 YSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLL 341


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 270 IEELDQIFGDSDRPVTFQDTLEMKYLERCLMETLRLYP 383
           I E +++   + R V F DTLE+K++ R     + + P
Sbjct: 472 IVEQEELSSKNPRKVHFSDTLEIKHVSRSGKANIEVIP 509


>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +2

Query: 17  WKDF-LSANHPVSRMT*TLTMMSDKRNVWPSLICCWRVHKVVWPFPMRKSKNK 172
           WK   +  N P +++   L  +SD +N+ P L+ C R    ++  P  K KN+
Sbjct: 160 WKILAIDINDPRAKL---LNDISDVQNLMPRLLPCTRDWFAIYKIPDGKPKNR 209


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 507 YQIQTNLTLTTSFRNVPPTDI 569
           +++Q  L  T   RN+PPT I
Sbjct: 293 FRVQAQLVATAPVRNIPPTGI 313


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 617 SNATSWSQLKKARTHNNVCWRNVPEGSCQ 531
           SN+T      K+  HNN C  N    +C+
Sbjct: 3   SNSTFHEHHAKSHFHNNACQSNASSSACR 31


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +3

Query: 225 LPINDGYSSRIQDKVIEELDQIFGDSDRPVT 317
           +P+ D + + +   +I E + +F D +RP T
Sbjct: 614 IPVEDTHPTLLVIDLINEFENLFADLERPST 644


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,147,039
Number of Sequences: 5004
Number of extensions: 71232
Number of successful extensions: 187
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)