Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0895
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...   161   4e-42
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    67   2e-13
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    49   5e-08
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   8.5  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score =  161 bits (392), Expect = 4e-42
 Identities = 77/133 (57%), Positives = 93/133 (69%)
 Frame = +3

Query: 255 IQDKVIEELDQIFGDSDRPVTFQDTLEMKYLERCLMETLRLYPPVPIIARQVNQEITLPS 434
           IQ+KVI+ELD+IFGDSDRP TFQDTLEMKYLERCL+ETLR+YPPVP+IAR++  ++ L S
Sbjct: 370 IQEKVIQELDEIFGDSDRPATFQDTLEMKYLERCLLETLRMYPPVPLIAREIKTDLKLAS 429

Query: 435 NGKKIPAGTTLVIATYKLHRRPDVYQIQTNLTLTTSFRNVPPTDIIMRSCLFQLGPRSCV 614
               IPAG T+VI T+KLHR+P +Y                          F  GPRSCV
Sbjct: 430 GDYTIPAGCTVVIGTFKLHRQPHIYPNPDVFDPDNFLPEKTANRHYYAFVPFSAGPRSCV 489

Query: 615 GRKYAMLKLKVIL 653
           GRKYAMLKLK++L
Sbjct: 490 GRKYAMLKLKIVL 502



 Score =  109 bits (263), Expect = 2e-26
 Identities = 51/87 (58%), Positives = 67/87 (77%)
 Frame = +1

Query: 16  VEGLSFGQSSGLKXXXXXXXXXGQKKRLAFLDLLLESSQSGVAISDEEIKEQVDTIMFEG 195
           VEG+SFGQS GLK         G+KKR AFLDLL+E+ Q+GV ++D+E+KEQVDTIMFEG
Sbjct: 290 VEGVSFGQSVGLKDDLDIDDDVGEKKRQAFLDLLIEAGQNGVLLTDKEVKEQVDTIMFEG 349

Query: 196 HXXTAAGSSFFLSMMGIHQEYKTKSLK 276
           H  TA+GSSFFL++MG H + + K ++
Sbjct: 350 HDTTASGSSFFLAVMGCHPDIQEKVIQ 376



 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +1

Query: 655 STILRNFRVISVLK 696
           STILRNFRV S +K
Sbjct: 503 STILRNFRVRSDVK 516


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 66.9 bits (156), Expect = 2e-13
 Identities = 35/131 (26%), Positives = 65/131 (49%)
 Frame = +3

Query: 255 IQDKVIEELDQIFGDSDRPVTFQDTLEMKYLERCLMETLRLYPPVPIIARQVNQEITLPS 434
           +Q K+ EE++     +++ + + D  EM+YL++   ETLR+YPP  I+ R+   + T   
Sbjct: 326 VQKKLREEINTFCPKNNKELKYDDIKEMEYLDKVFKETLRMYPPASILMRKAISDYTFND 385

Query: 435 NGKKIPAGTTLVIATYKLHRRPDVYQIQTNLTLTTSFRNVPPTDIIMRSCLFQLGPRSCV 614
               IP    + I  + +HR   +Y    +       ++   +   M    F  GPR+C+
Sbjct: 386 TKITIPKEMKIWIPAFAIHRDSAIYPNPDSFDPERFDQDAMASRHPMHYLPFGDGPRNCI 445

Query: 615 GRKYAMLKLKV 647
           G ++A+ + KV
Sbjct: 446 GARFAVYQTKV 456


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 48.8 bits (111), Expect = 5e-08
 Identities = 36/139 (25%), Positives = 71/139 (51%), Gaps = 1/139 (0%)
 Frame = +3

Query: 240 GYSSRIQDKVIEELDQIFGDSDRPVTFQDTLEMKYLERCLMETLRLYPPVPIIARQVNQE 419
           G +  +Q+K+ EE   +   +   +T  +  + KYL  C+ E+LRL P    IAR +++ 
Sbjct: 347 GRNPTVQNKLYEETYAL-APAGCDLTIDNLRKAKYLRACITESLRLIPTTTCIARILDEP 405

Query: 420 ITLPSNGKKIPAGTTLVIATYKLHRRPDVYQ-IQTNLTLTTSFRNVPPTDIIMRSCLFQL 596
           I L  +G ++ AGT +++ T+      + ++  +  L    +    P + +++    F  
Sbjct: 406 IEL--SGYRLTAGTVVLLHTWIAGLNEENFKDAKKYLPERWTTPTTPHSPLLVAP--FGA 461

Query: 597 GPRSCVGRKYAMLKLKVIL 653
           G R C G+++  L L++IL
Sbjct: 462 GRRICPGKRFVDLALQLIL 480


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 157 PHRKWPHHFVNSPATDQG 104
           P+R  PH+ V   A  QG
Sbjct: 108 PYRPHPHNLVGKEACKQG 125


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 157 PHRKWPHHFVNSPATDQG 104
           P+R  PH+ V   A  QG
Sbjct: 108 PYRPHPHNLVGKEACKQG 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,372
Number of Sequences: 438
Number of extensions: 4961
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)