Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0894
(689 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0762 + 6915299-6915532,6916043-6916220,6916490-6916656,691... 69 5e-12
12_01_0756 + 6869100-6869327,6869943-6870123,6870233-6870399,687... 67 1e-11
04_04_0380 - 24833533-24834161,24834247-24834427,24834560-24834787 67 1e-11
11_02_0101 - 8306468-8307099,8307227-8307404,8307990-8308259 64 1e-10
01_06_1628 + 38745964-38746480,38747116-38747282,38747325-387474... 41 3e-09
12_01_0758 + 6889033-6889275,6889679-6889856,6891591-6891619 58 5e-09
12_01_0760 + 6910325-6910558,6911305-6911455,6911949-6912115,691... 54 8e-08
06_03_0679 - 23464009-23464381,23464804-23464886,23466537-234667... 43 2e-04
12_01_0764 + 6934570-6934726,6935150-6935316,6935408-6935490,693... 42 6e-04
12_01_0763 + 6931678-6931911,6932161-6932172 35 0.053
02_01_0617 + 4625564-4625887,4626824-4626944,4627643-4627833,462... 31 1.1
03_03_0138 + 14766592-14766754,14768052-14768476 29 4.6
02_01_0778 - 5799260-5799273,5799377-5799447,5800163-5800578 29 4.6
12_02_0634 + 21416205-21416954 28 6.1
12_02_0075 - 13254336-13254773 28 6.1
03_02_0686 + 10407800-10409501,10409611-10410284 28 6.1
12_02_1128 - 26341118-26341204,26341302-26341441,26341567-263416... 28 8.0
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967... 28 8.0
06_03_0743 + 24069752-24070483,24071890-24072345 28 8.0
03_05_0488 - 24847076-24847220,24847823-24847872,24848139-248482... 28 8.0
>12_01_0762 +
6915299-6915532,6916043-6916220,6916490-6916656,
6916770-6916852,6916940-6917318
Length = 346
Score = 68.5 bits (160), Expect = 5e-12
Identities = 35/101 (34%), Positives = 58/101 (57%), Gaps = 2/101 (1%)
Frame = +3
Query: 3 LRTVYLSLDPYMRGRMS--DEPSYSPPVDIGGVMVGGTVSRVVESNHPDYQSGDWVLGYS 176
++ +Y+S DPYMR RM+ + PSY G V+ V RV+ S HPD+++GD V G +
Sbjct: 47 VKNLYVSCDPYMRNRMTRHEVPSYVSDFIPGEVLANFGVMRVISSGHPDFKAGDLVWGIT 106
Query: 177 GWQDYDISSGDDLVKLGDHPQNPSWSWVC*GCQALPLIWAY 299
GW++Y + + + + +HP+ P + G +P + AY
Sbjct: 107 GWEEYTVINNPESLFRINHPKLPLSYYT--GILGMPGLTAY 145
Score = 39.5 bits (88), Expect = 0.002
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = +2
Query: 257 GVLGMPGFTAYMGLLDIGQPKEGE 328
G+LGMPG TAY G ++ +PK+GE
Sbjct: 135 GILGMPGLTAYAGFFEVSKPKKGE 158
>12_01_0756 +
6869100-6869327,6869943-6870123,6870233-6870399,
6870523-6870605,6870716-6871094
Length = 345
Score = 67.3 bits (157), Expect = 1e-11
Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Frame = +3
Query: 3 LRTVYLSLDPYMRGRMS--DEPSYSPPVDIGGVMVGGTVSRVVESNHPDYQSGDWVLGYS 176
++ +Y+S DPYMRGRM+ + PSY P G V+ V +VV S HPD++ GD V G +
Sbjct: 45 VKNLYVSCDPYMRGRMTRHEVPSYVPDYVPGEVITNCGVMKVVSSGHPDFKDGDLVWGVT 104
Query: 177 GWQDYDI 197
GW++Y +
Sbjct: 105 GWEEYTL 111
Score = 33.1 bits (72), Expect = 0.21
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +2
Query: 257 GVLGMPGFTAYMGLLDIGQPKEGE 328
GVLG+ G TAY G ++ +PK+G+
Sbjct: 134 GVLGIAGLTAYGGFFEVSKPKKGD 157
>04_04_0380 - 24833533-24834161,24834247-24834427,24834560-24834787
Length = 345
Score = 67.3 bits (157), Expect = 1e-11
Identities = 29/66 (43%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Frame = +3
Query: 3 LRTVYLSLDPYMRGRMSD-EPSYSPPVDIGGVMVGGTVSRVVESNHPDYQSGDWVLGYSG 179
++ +YLS DPYMRGRMS + SY +G + G V +VV+S+HP +++GD V G +G
Sbjct: 46 VKNLYLSCDPYMRGRMSSHDGSYVDAFVVGEAITGYGVGKVVDSSHPGFKAGDLVWGMTG 105
Query: 180 WQDYDI 197
W++Y +
Sbjct: 106 WEEYSL 111
Score = 36.3 bits (80), Expect = 0.023
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +2
Query: 257 GVLGMPGFTAYMGLLDIGQPKEGE 328
G+LGM GFTAY+G +I P+EGE
Sbjct: 134 GLLGMAGFTAYVGFHEICAPREGE 157
>11_02_0101 - 8306468-8307099,8307227-8307404,8307990-8308259
Length = 359
Score = 63.7 bits (148), Expect = 1e-10
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Frame = +3
Query: 3 LRTVYLSLDPYMRGRMS--DEPSYSPPVD--IGGVMVGGTVSRVVESNHPDYQSGDWVLG 170
++ +YLS DP+MRGRM+ D+ + D +G MV VS+VV+S HP + +GD V G
Sbjct: 57 VKNIYLSCDPWMRGRMTKHDDATAEIAEDFVLGEAMVNFGVSKVVDSTHPVFAAGDLVWG 116
Query: 171 YSGWQDYDISSGDDLVKLGDHPQNP 245
GW++Y + + + + +HP P
Sbjct: 117 LCGWEEYSLITQPETLHKINHPDLP 141
Score = 35.1 bits (77), Expect = 0.053
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +2
Query: 257 GVLGMPGFTAYMGLLDIGQPKEGE 328
GVLG+ G TAY ++G+PK+GE
Sbjct: 147 GVLGVTGLTAYAAFFEVGKPKKGE 170
>01_06_1628 +
38745964-38746480,38747116-38747282,38747325-38747440,
38747718-38748114
Length = 398
Score = 41.1 bits (92), Expect(2) = 3e-09
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +3
Query: 93 VMVGGTVSRVVESNHPDYQSGDWVLGYSGWQDYDI 197
V+ G V+RVV+S HP + +GD V G +GW++Y +
Sbjct: 114 VIEGLGVARVVDSTHPGFSAGDIVSGMTGWEEYSL 148
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = +2
Query: 254 VGVLGMPGFTAYMGLLDIGQPKEGE 328
+G+LGMPGFTAY G +I PK+GE
Sbjct: 169 LGLLGMPGFTAYAGFYEICSPKKGE 193
Score = 37.9 bits (84), Expect(2) = 3e-09
Identities = 18/32 (56%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +3
Query: 3 LRTVYLSLDPYMRGRMSD-EPSYSPPVDIGGV 95
++ +YLS DPYMRGRM D SY PP G V
Sbjct: 47 VKNLYLSCDPYMRGRMRDFHGSYIPPFKPGSV 78
>12_01_0758 + 6889033-6889275,6889679-6889856,6891591-6891619
Length = 149
Score = 58.4 bits (135), Expect = 5e-09
Identities = 29/84 (34%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Frame = +3
Query: 3 LRTVYLSLDPYMRGRM--SDEPSYSPPVDIGGVMVGGTVSRVVESNHPDYQSGDWVLGYS 176
++ +Y+S DPY+R RM + P+Y G V+ V +V+ S H D+++GD V G +
Sbjct: 50 VKNLYISCDPYLRNRMIRHEVPTYISDFVPGEVVTSHGVMKVISSGHLDFKAGDLVWGMT 109
Query: 177 GWQDYD-ISSGDDLVKLGDHPQNP 245
GW++Y I++ + L K+ ++P+ P
Sbjct: 110 GWEEYTLINNPESLFKI-NYPEFP 132
>12_01_0760 +
6910325-6910558,6911305-6911455,6911949-6912115,
6912227-6912309,6912395-6912773
Length = 337
Score = 54.4 bits (125), Expect = 8e-08
Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
Frame = +3
Query: 3 LRTVYLSLDPYMRGRMSDE--PSYSPPVDIGGVMVGGTVSRVVESNHPDYQSGDWVLGYS 176
++ +Y+S DPYMR RM+ PSY P G V+ S H D+++GD V G +
Sbjct: 47 VKNLYVSCDPYMRNRMTHHELPSYIPDFVPG---------EVISSGHLDFKAGDLVWGMT 97
Query: 177 GWQDYD-ISSGDDLVKLGDHPQNPSWSWVC*GCQALPLIWAY 299
GW++Y I++ + L K+ +HP+ P + G +P + AY
Sbjct: 98 GWEEYTVINNPESLFKI-NHPELPLSYYT--GILGMPGLTAY 136
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +2
Query: 257 GVLGMPGFTAYMGLLDIGQPKEGE 328
G+LGMPG TAY G D+ +PK+GE
Sbjct: 126 GILGMPGLTAYAGFFDVPKPKKGE 149
>06_03_0679 -
23464009-23464381,23464804-23464886,23466537-23466703,
23466821-23467007,23467093-23467311
Length = 342
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Frame = +3
Query: 3 LRTVYLSLDPYMRGRMSDEPSYSPPVDIGGVMVGGTVS-----RVVESNHPDYQSGDWVL 167
+R +YLS+DPY RM + VD G++ G + VV S +Y+ GD V
Sbjct: 41 VRNLYLSVDPYQLNRMKRRSASHLAVD--GIVPGERIDAYGAGEVVASACEEYKEGDVVA 98
Query: 168 GYSGWQDYDI 197
G GW+DY +
Sbjct: 99 GVLGWEDYTL 108
Score = 31.9 bits (69), Expect = 0.49
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 254 VGVLGMPGFTAYMGLLDIGQPKEGE 328
+ LG G TAY GL ++G+P+ GE
Sbjct: 132 LSALGTSGMTAYAGLYEVGRPEAGE 156
>12_01_0764 +
6934570-6934726,6935150-6935316,6935408-6935490,
6935588-6935966
Length = 261
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/61 (29%), Positives = 35/61 (57%)
Frame = +3
Query: 117 RVVESNHPDYQSGDWVLGYSGWQDYDISSGDDLVKLGDHPQNPSWSWVC*GCQALPLIWA 296
+V+ S H D+++GD V G +GW++Y + + + + +HP+ P + G +P + A
Sbjct: 2 KVISSGHQDFKAGDLVWGITGWEEYTVINNPETLFKINHPELPLSYYT--GILGMPGLTA 59
Query: 297 Y 299
Y
Sbjct: 60 Y 60
Score = 38.7 bits (86), Expect = 0.004
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = +2
Query: 257 GVLGMPGFTAYMGLLDIGQPKEGE 328
G+LGMPG TAY G ++ +PK+GE
Sbjct: 50 GILGMPGLTAYGGFFEVAKPKKGE 73
>12_01_0763 + 6931678-6931911,6932161-6932172
Length = 81
Score = 35.1 bits (77), Expect = 0.053
Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Frame = +3
Query: 3 LRTVYLSLDPYMRGRMS--DEPSYSPPVDIG 89
++ +Y+S DPYMR RM+ +EPSY P +G
Sbjct: 47 VKNLYISCDPYMRNRMTYHEEPSYVPDFVLG 77
>02_01_0617 +
4625564-4625887,4626824-4626944,4627643-4627833,
4627910-4628041,4628132-4628269
Length = 301
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 18 LSLDPYMRGRMSDEPSYSPPVDIGGVMVGGTVSRVVESNHPDYQ 149
L++DP S PS+SP GG + GG + + HP Y+
Sbjct: 10 LAMDPSSAAASSPNPSFSPGGGGGGGVGGGEREKAAVAAHPLYE 53
>03_03_0138 + 14766592-14766754,14768052-14768476
Length = 195
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = +3
Query: 363 GRRWGKSNTCKSNGN---RKKLASLLTSGGRVSNVWETA*WRGITTGNGS 503
GRRW +SN G+ R +ASL G V + WRG T G+
Sbjct: 64 GRRWCRSNGRHERGSVGGRSAVASLGKGKGSVGGSVQAGQWRGEATPAGA 113
>02_01_0778 - 5799260-5799273,5799377-5799447,5800163-5800578
Length = 166
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 105 GTVSRVVESNHPDYQSGDWVLGYSGWQDYDISS 203
G S V ++ P ++SGDW+ SG +++ +S
Sbjct: 117 GFGSGAVRASRPGWKSGDWICTRSGCNEHNFAS 149
>12_02_0634 + 21416205-21416954
Length = 249
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = +1
Query: 292 GPTGYRSA*RGRNVGGSCGDRTSGGDGGANLTHASRTVTGRSL 420
G G A RG G C G GG L R GR L
Sbjct: 153 GRGGSCDAGRGGGAAGGCTGEAGGAAGGGRLGEKRRATAGRQL 195
>12_02_0075 - 13254336-13254773
Length = 145
Score = 28.3 bits (60), Expect = 6.1
Identities = 23/83 (27%), Positives = 32/83 (38%)
Frame = +1
Query: 166 WATVDGKTMTYPVVMIW*NLAIIRKIHRGRGCARDARLYRLYGPTGYRSA*RGRNVGGSC 345
W D TM V + ++ ++ G GC ARLYR + +G RG
Sbjct: 21 WRVADAVTMRLLVASVVVCVSGGARLAHGHGCGAIARLYRSFRHSGACEIVRGAEARFGA 80
Query: 346 GDRTSGGDGGANLTHASRTVTGR 414
G D G + + TV GR
Sbjct: 81 IWHAGGMDVG-GIQYKRCTVHGR 102
>03_02_0686 + 10407800-10409501,10409611-10410284
Length = 791
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 322 GRNVGGSCGDRTSGGDGGANLTH 390
G++ GG G +GGDGG L H
Sbjct: 444 GKSGGGGGGSGGAGGDGGGKLVH 466
>12_02_1128 -
26341118-26341204,26341302-26341441,26341567-26341663,
26341755-26341830,26341919-26342118,26342199-26342297,
26342395-26342479,26342786-26343024,26343233-26343403,
26343605-26343848,26343980-26344253,26344755-26344934,
26345342-26345423,26346209-26346278,26346802-26346901,
26347003-26347097,26347181-26347317,26347342-26347420,
26347591-26347651,26348580-26349009
Length = 981
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -2
Query: 397 DLHVLDLPHRRPHW 356
DLHVLDL +RP W
Sbjct: 221 DLHVLDLTQQRPRW 234
>10_08_0253 -
16196275-16196307,16196425-16196550,16196643-16196741,
16196822-16197001,16197090-16197371,16197471-16199141,
16199257-16199463,16199566-16199700,16199792-16200082,
16200403-16200621,16200876-16201034,16201120-16201181,
16201257-16201383,16201460-16201693,16201777-16202003,
16202163-16202257,16202341-16202468,16202574-16202594,
16202765-16202921,16203007-16203075,16203228-16203341,
16203415-16203491,16203576-16203688,16204432-16204507,
16204592-16204756,16204825-16204952,16205049-16205130,
16205426-16205548,16205633-16205860,16205933-16206034,
16206144-16206341,16206581-16206760,16206868-16207020,
16207690-16207797,16208201-16208355,16208786-16208912,
16209825-16209914,16209986-16210127,16210303-16210379,
16210467-16210582,16210638-16210773,16211130-16211198,
16211279-16211361,16211655-16211720,16211788-16211974,
16212054-16213547,16213635-16214165,16214234-16214363,
16214407-16215878,16216359-16216364,16216750-16217055,
16217364-16217468,16217577-16217772,16217862-16217929,
16218853-16220631,16221026-16221151,16221604-16221780,
16221997-16222128,16223461-16223498,16223710-16223788,
16224175-16224284,16224787-16224935,16225027-16225197,
16225281-16225552,16226355-16226442,16227942-16228369
Length = 5157
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = -3
Query: 597 PPPTS*FQSGQIRWQEARKVPLFGLATLCGISYRFQ*LSPSI 472
PPP F SG + Q KV L L +SYRF L P +
Sbjct: 153 PPPFQRFLSGGVPSQIPIKVGLHLLLDATQVSYRFLELEPRV 194
>06_03_0743 + 24069752-24070483,24071890-24072345
Length = 395
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = -3
Query: 309 PISSRPI*AVKPGIPSTPTTTMDFADD---RQVSPDHHH 202
P SS PI P + TP+TT D DD R+ DHHH
Sbjct: 52 PPSSPPIREALPLLSLTPSTTHD--DDHHHRRHDQDHHH 88
>03_05_0488 -
24847076-24847220,24847823-24847872,24848139-24848278,
24848358-24848493,24848584-24848683,24848837-24848949,
24849034-24849132,24849227-24849311,24849799-24850037,
24850202-24850372,24850544-24850784,24850899-24851172,
24851481-24851660,24852170-24852251,24852336-24852437,
24853315-24853384,24853725-24853824,24853931-24854025,
24854105-24854184,24854361-24854439,24854603-24854663,
24855570-24855984
Length = 1018
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -2
Query: 397 DLHVLDLPHRRPHW 356
DLHVLDL +RP W
Sbjct: 197 DLHVLDLTQQRPRW 210
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,898,879
Number of Sequences: 37544
Number of extensions: 552741
Number of successful extensions: 1836
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1818
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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