Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0894
         (689 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45041| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   5e-08
SB_1002| Best HMM Match : OTCace_N (HMM E-Value=0)                     31   0.67 
SB_27494| Best HMM Match : MFAP1_C (HMM E-Value=0)                     30   2.0  
SB_5913| Best HMM Match : RVT_1 (HMM E-Value=1.2)                      29   4.7  
SB_23149| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  

>SB_45041| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1278

 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
 Frame = +3

Query: 3   LRTVYLSLDPYMRGRMSDEPS--YSPPVDIGGVMVGGTVSRVVESNHPDYQSGDWVLGYS 176
           ++T+YLS+DPYMR RM++  S  Y  P +IG V+ GG V RV ES    +  GD V  + 
Sbjct: 44  VKTLYLSVDPYMRSRMNEGGSVGYIAPFEIGKVLSGGGVGRVEESKSDKFSVGDIVECFG 103

Query: 177 -GWQDYDISSGD 209
             WQ Y +   D
Sbjct: 104 FPWQHYCVLPED 115


>SB_1002| Best HMM Match : OTCace_N (HMM E-Value=0)
          Length = 563

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = -2

Query: 607 EPFTPTY*LIPIWANPMARGPKGPPLWSCDVMRN*LPFPVVIPLHQAVSQTLLTRPPLVS 428
           EP  P     P  + P++RGP  P      V+R+ +P   VIP  Q ++  +L+   L  
Sbjct: 135 EPLPPVADTSPHMSEPVSRGPSTPVAVQAPVLRDVMPVMPVIPA-QVITGHILSAGQLTK 193

Query: 427 KE 422
           ++
Sbjct: 194 EQ 195


>SB_27494| Best HMM Match : MFAP1_C (HMM E-Value=0)
          Length = 808

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
 Frame = +3

Query: 141 DYQSG-DWVLGYSGWQDYDISSGDDLVK----LGDHPQNPSWSWV 260
           D+ SG DWV GY     YD  SG D V     +  H   P + WV
Sbjct: 654 DWFSGYDWVPGYDWVSGYDWFSGSDWVSGYDWVSGHDWVPGYDWV 698



 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = +3

Query: 156 DWVLGYSGWQDYDISSGDDLVKLGDHPQNPSW 251
           DWV GY     YD  SG D V   D      W
Sbjct: 558 DWVQGYDWVSGYDCVSGSDCVSGYDWVSGSDW 589



 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 141 DYQSG-DWVLGYSGWQDYDISSGDDLVKLGDHPQNPSWSWV 260
           D+ SG DWV GY     YD  SG D V    +   P + WV
Sbjct: 612 DWVSGSDWVSGYDWVSGYDWVSGYDWVP--GYDWVPGYDWV 650


>SB_5913| Best HMM Match : RVT_1 (HMM E-Value=1.2)
          Length = 628

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = -2

Query: 652 GSSFSDPARGSVALGEPFTPTY*LIPIWANPMARGPKGPPLWSCDVMRN*LPFPV 488
           GSS +D       LGEP T TY  +   A  +    +G  L+ CD+ +     PV
Sbjct: 240 GSSVNDGVPQHTYLGEPITLTYPTVDNIAEAVVSLGRGCLLFKCDLRKAFRQLPV 294


>SB_23149| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +1

Query: 250 GRGCARDARLYRLYGPTGYRSA*RGRNVGGSCGDRTSGGDGGAN 381
           G G    A L   YG  G R+  +  N GG  G+ ++GG GG N
Sbjct: 247 GYGGETYACLSSTYGKGGDRN--QPGNAGGGAGEGSTGGPGGIN 288


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,594,620
Number of Sequences: 59808
Number of extensions: 544253
Number of successful extensions: 1395
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1385
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)