Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0894
         (689 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30215-9|CAB54247.1| 1037|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z30215-8|CAA82941.1| 1040|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z29121-4|CAB54514.1| 1037|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z29121-3|CAA82389.1| 1040|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AL021473-2|CAA16304.1|  301|Caenorhabditis elegans Hypothetical ...    27   9.6  
AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ...    27   9.6  
AF045646-2|AAK29827.1|  371|Caenorhabditis elegans Collagen prot...    27   9.6  

>Z30215-9|CAB54247.1| 1037|Caenorhabditis elegans Hypothetical
           protein ZK757.3b protein.
          Length = 1037

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 292 GPTGYRSA*RGRNVGGSCGDRTSGGDGGANL 384
           GP GYR   RG   GGS G+  + G  GAN+
Sbjct: 336 GPGGYRGG-RGGGRGGSYGNFGNRGPPGANV 365


>Z30215-8|CAA82941.1| 1040|Caenorhabditis elegans Hypothetical
           protein ZK757.3a protein.
          Length = 1040

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 292 GPTGYRSA*RGRNVGGSCGDRTSGGDGGANL 384
           GP GYR   RG   GGS G+  + G  GAN+
Sbjct: 339 GPGGYRGG-RGGGRGGSYGNFGNRGPPGANV 368


>Z29121-4|CAB54514.1| 1037|Caenorhabditis elegans Hypothetical
           protein ZK757.3b protein.
          Length = 1037

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 292 GPTGYRSA*RGRNVGGSCGDRTSGGDGGANL 384
           GP GYR   RG   GGS G+  + G  GAN+
Sbjct: 336 GPGGYRGG-RGGGRGGSYGNFGNRGPPGANV 365


>Z29121-3|CAA82389.1| 1040|Caenorhabditis elegans Hypothetical
           protein ZK757.3a protein.
          Length = 1040

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 292 GPTGYRSA*RGRNVGGSCGDRTSGGDGGANL 384
           GP GYR   RG   GGS G+  + G  GAN+
Sbjct: 339 GPGGYRGG-RGGGRGGSYGNFGNRGPPGANV 368


>AL021473-2|CAA16304.1|  301|Caenorhabditis elegans Hypothetical
           protein Y20C6A.3 protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = +3

Query: 27  DPYMRGRMSDE--PSYSPPVDIGGVMVGGTVSRVVESN---HPDYQSGDW 161
           D  M+ R++DE  P   PP D+      GTVS +++ N   H +++   W
Sbjct: 194 DKKMKRRVNDEMRPRTDPPTDLSQQACYGTVSDMLDWNNWSHENWKDMSW 243


>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
            protein W05F2.7 protein.
          Length = 1424

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 372  WGKSNTCKSNGNRKKLASLLTS-GGRVSNVWETA*WRGITTGN 497
            W   ++  ++GN   +A  L S GG ++N W T      T+GN
Sbjct: 1059 WNSLSSNNTSGNSTWIAGALNSTGGFLTNAWNTIGSNNGTSGN 1101


>AF045646-2|AAK29827.1|  371|Caenorhabditis elegans Collagen protein
           103 protein.
          Length = 371

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
 Frame = +1

Query: 265 RDARLYRLYGPTG-YRSA*RGRNVGGSCGDRTSGGDGG 375
           R+ R Y  YG  G Y     G  VGG  G    GG GG
Sbjct: 66  REKRGYAQYGGGGGYGGGHGGAAVGGGYGGAVGGGGGG 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,801,450
Number of Sequences: 27780
Number of extensions: 378732
Number of successful extensions: 932
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)