Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0894
         (689 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   1.6  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    24   1.6  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   3.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.3  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   8.4  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 679 RCSSVPYVAGSSFSDPARGSVALGEP 602
           R +S P  + SS S PA+G+ A G+P
Sbjct: 516 RIASAPSSSTSS-SPPAKGAAAAGQP 540


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 184 KTMTYPVVMIW*NLAIIRKIHRGRGCARDAR-LYRLYGPT 300
           K  T  V+M    L +  +IHRG G   DAR L+R    T
Sbjct: 241 KLGTKQVLMASGELELTLRIHRGGGTNTDARHLFRTASST 280


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = -1

Query: 263 AHPRPRWILRMIAKFHQIITTGYVIVLPSTVAQHPVARLIIRMI 132
           AHPR  +    + +  Q +  G V++     A  P+A +++  I
Sbjct: 298 AHPREEFNHWTVMRCVQAMIAGIVVISAGADAYPPLAAIVLGAI 341


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 424 EASFFLLPFDLHVLDLPHRRPHWSCRRSYHQRFALFRLT 308
           E++ FL  ++LH L+L   +      + ++  F L RLT
Sbjct: 375 ESNAFLPLYNLHTLELSDNKLRTVGAQLFNGLFVLNRLT 413


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +3

Query: 102 GGTVSRVVESNHPDYQSGDWVLGYSGWQ 185
           G T   V++ N P   +  + LG   WQ
Sbjct: 219 GYTAPEVIKQNRPTPAADIYSLGIVAWQ 246


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,039
Number of Sequences: 438
Number of extensions: 5065
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)