Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0893
         (669 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            24   1.3  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    24   1.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.3  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   4.0  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   4.0  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   4.0  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   4.0  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           21   9.1  

>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/30 (30%), Positives = 12/30 (40%)
 Frame = +3

Query: 489 PSNPPPANHRYTIIPDRHPTSTTIPVRPWM 578
           P N PPA +   +          +P  PWM
Sbjct: 89  PQNTPPAGYPMDVPHGMGSPGVNVPEYPWM 118


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/30 (30%), Positives = 12/30 (40%)
 Frame = +3

Query: 489 PSNPPPANHRYTIIPDRHPTSTTIPVRPWM 578
           P N PPA +   +          +P  PWM
Sbjct: 89  PQNTPPAGYPMDVPHGMGSPGVNVPEYPWM 118


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 7/23 (30%), Positives = 10/23 (43%)
 Frame = -2

Query: 446 DWRYRVTWMKHCNCSGWIDNSHY 378
           DW Y V W  +C      D  ++
Sbjct: 755 DWNYPVCWQSNCKKGASSDKPNF 777



 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/23 (34%), Positives = 9/23 (39%)
 Frame = -2

Query: 446  DWRYRVTWMKHCNCSGWIDNSHY 378
            DW Y   W   CN     D S +
Sbjct: 1943 DWEYPKCWQVDCNKGPASDKSAF 1965



 Score = 21.0 bits (42), Expect = 9.1
 Identities = 6/13 (46%), Positives = 6/13 (46%)
 Frame = -2

Query: 446  DWRYRVTWMKHCN 408
            DW Y   W   CN
Sbjct: 2441 DWEYPKCWQVDCN 2453


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 211  EKAPEAISKAVATLPQNR 264
            E A E  S+ V+T+PQN+
Sbjct: 1188 ESANETDSETVSTVPQNK 1205


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 211  EKAPEAISKAVATLPQNR 264
            E A E  S+ V+T+PQN+
Sbjct: 1188 ESANETDSETVSTVPQNK 1205


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 211  EKAPEAISKAVATLPQNR 264
            E A E  S+ V+T+PQN+
Sbjct: 1188 ESANETDSETVSTVPQNK 1205


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 211  EKAPEAISKAVATLPQNR 264
            E A E  S+ V+T+PQN+
Sbjct: 1188 ESANETDSETVSTVPQNK 1205


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 465 PAQTNTYIPSNPPPANHRYTIIP 533
           P+ T+    +  PP ++ Y IIP
Sbjct: 135 PSTTDDLSTNPTPPPHYTYQIIP 157


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,567
Number of Sequences: 336
Number of extensions: 3567
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)