Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0893
(669 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 64 2e-11
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 52 8e-08
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 42 1e-04
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 42 1e-04
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 40 4e-04
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 39 7e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 37 0.002
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 37 0.002
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 37 0.003
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 35 0.009
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 35 0.009
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 34 0.016
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 34 0.016
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 33 0.028
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 33 0.037
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 33 0.049
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 32 0.065
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 31 0.15
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 31 0.15
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 31 0.15
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 29 0.61
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 29 0.80
SPBC83.13 |||mitochondrial tricarboxylic acid transporter|Schizo... 28 1.1
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 28 1.1
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 28 1.4
SPAC21E11.03c |pcr1|mts2|transcription factor Pcr1|Schizosacchar... 27 1.8
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 27 1.8
SPBPB21E7.05 ||SPAPB21E7.05, SPAPB21E7.05|sequence orphan|Schizo... 27 2.4
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 2.4
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 27 3.2
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 27 3.2
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.2
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 26 4.3
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 26 4.3
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 26 5.6
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c... 26 5.6
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 26 5.6
SPAC869.10c |||proline specific permease |Schizosaccharomyces po... 26 5.6
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 26 5.6
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ... 25 7.5
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 25 7.5
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 25 7.5
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 9.9
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom... 25 9.9
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 25 9.9
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo... 25 9.9
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 25 9.9
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 63.7 bits (148), Expect = 2e-11
Identities = 28/47 (59%), Positives = 34/47 (72%)
Frame = +1
Query: 4 ETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSR 144
E+G+PKGYGFCEY D TA SA+RNLN Y+ G R LRVD ++ R
Sbjct: 41 ESGQPKGYGFCEYHDPATAASAVRNLNNYDAGTRRLRVDFPTADQIR 87
Score = 37.9 bits (84), Expect = 0.001
Identities = 20/81 (24%), Positives = 38/81 (46%)
Frame = +3
Query: 249 IAPEQMFELMKQMKLCIQNNPNEARNMLLQNPQLAYALLQAQVIMRIVDPATAVTMLHPS 428
+AP ++ ++ +K P +A + NPQL+YA+ QA ++ R + +L P+
Sbjct: 166 LAPNEIDYMLSAIKALCLEAPEQAAQLFETNPQLSYAVFQAMLMKRYTSESVVADLLIPA 225
Query: 429 NPVPPILLPGDKPAQTNTYIP 491
+ LPG + + P
Sbjct: 226 G----VNLPGAQEPNRGYFSP 242
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 52.0 bits (119), Expect = 8e-08
Identities = 22/39 (56%), Positives = 27/39 (69%)
Frame = +1
Query: 4 ETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVD 120
ETG KGYGFCE+ D ET A+R LN E+G R +RV+
Sbjct: 43 ETGSGKGYGFCEFFDSETTAMAVRKLNNSELGPRKIRVE 81
Score = 42.3 bits (95), Expect = 6e-05
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Frame = +3
Query: 258 EQMFELMKQMKLCIQNNPNEARNMLLQNPQLAYALLQAQVIMRIVDP---ATAVTMLHPS 428
+++ ++ +++ + P EAR +L+ NP L YA QA ++M +VD V +
Sbjct: 228 QELLNMLSKLQTVVHIAPEEARRLLIANPALPYAAFQAMLLMNLVDANVLQQVVVAVKNK 287
Query: 429 NPVPPILLPGDKPAQTNTYIPSNPPPANHR 518
N P P+ +P P +NH+
Sbjct: 288 NMHQPASATSSPPS-----VPQKIPSSNHK 312
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 41.5 bits (93), Expect = 1e-04
Identities = 16/40 (40%), Positives = 27/40 (67%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
TG+ KG+G +++++ A S++ LNGY GGR L++ A
Sbjct: 316 TGRSKGFGVVQFENENDAASSIEKLNGYRYGGRPLQLSYA 355
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 41.5 bits (93), Expect = 1e-04
Identities = 17/46 (36%), Positives = 30/46 (65%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEK 138
+ETGK KG+ F +Y+DQ + + A+ N+ ++ R +RVD+ + K
Sbjct: 66 KETGKSKGFAFLKYEDQRSTVLAVDNMTNVKLLDRLVRVDHVASYK 111
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 39.5 bits (88), Expect = 4e-04
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +1
Query: 10 GKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQVEN 186
GK +G+GF +KD + L A R NG IG R +++ A ++ E+ ++ N
Sbjct: 67 GKTRGFGFVSFKDSDQFLKAWREKNGKYIGSRPVKLSRATSDVKPNEVNEKTIDSKIRN 125
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 38.7 bits (86), Expect = 7e-04
Identities = 12/38 (31%), Positives = 28/38 (73%)
Frame = +1
Query: 4 ETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
+ + KG+G+ +Y++ +A +A+ +NG+++ GR++RV
Sbjct: 375 DQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRV 412
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 37.1 bits (82), Expect = 0.002
Identities = 20/50 (40%), Positives = 29/50 (58%)
Frame = +1
Query: 4 ETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEM 153
ETG+ +GYGF + E A A + L ++ GR LR+D A T + R E+
Sbjct: 41 ETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDFA-TPRKRSEV 89
Score = 36.7 bits (81), Expect = 0.003
Identities = 18/42 (42%), Positives = 26/42 (61%)
Frame = +1
Query: 10 GKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTE 135
G+ G+ F KD++ A AM +LNG EI GR + VD A ++
Sbjct: 145 GRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVSK 186
Score = 32.3 bits (70), Expect = 0.065
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +1
Query: 10 GKPKGYGFCEYKDQETALSAMRNLNGYEI 96
G+ KG+GF ++ + AL A+R LNG EI
Sbjct: 536 GRSKGFGFMQFISHKYALMALRWLNGREI 564
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 37.1 bits (82), Expect = 0.002
Identities = 13/32 (40%), Positives = 23/32 (71%)
Frame = +1
Query: 22 GYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
G+GF E+KD+ +A++AM +NG+ + G L +
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEI 697
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 36.7 bits (81), Expect = 0.003
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +1
Query: 4 ETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRME 150
+ KP+G+GF Y + E A A+ LN E G+ L V A + R E
Sbjct: 296 QNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREE 344
Score = 33.5 bits (73), Expect = 0.028
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +1
Query: 4 ETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRM-EMQAL 162
E G KGYGF + E+A +A+ ++NG + + + V + + + R +++AL
Sbjct: 203 ELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEAL 256
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 35.1 bits (77), Expect = 0.009
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +1
Query: 4 ETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVD 120
+ G +G F + E A + ++ LNGYEI GR LRV+
Sbjct: 268 DNGVFRGLAFANFHSPEEAKTVVQVLNGYEITGRRLRVE 306
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 35.1 bits (77), Expect = 0.009
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVD 120
+ETG+ KG+ F Y D++ A+ A L+GY LR +
Sbjct: 237 KETGRAKGFAFVSYYDRDCAIKARDRLDGYGWNNLILRCE 276
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 34.3 bits (75), Expect = 0.016
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 4 ETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVD 120
+ G +G F + E A ++ LNGYEI GR LRV+
Sbjct: 238 DNGIFRGLAFANFYRPEEAQVVVQTLNGYEINGRRLRVE 276
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 34.3 bits (75), Expect = 0.016
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
T +G+GF + E A SA+ NLN E GR L V A
Sbjct: 138 TKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKA 177
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 33.5 bits (73), Expect = 0.028
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 10 GKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNAC 129
G KG+ FCE+K+ A A+ L+G + G L AC
Sbjct: 348 GSSKGFCFCEFKNPSDAEVAISGLDGKDTYGNKLHAQFAC 387
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 33.1 bits (72), Expect = 0.037
Identities = 25/86 (29%), Positives = 37/86 (43%)
Frame = +1
Query: 4 ETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQVE 183
E G+ KGYGF Y ETA +A+ +N + + + V A + + E
Sbjct: 135 ENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGKGER---------- 184
Query: 184 NPYGDPVEPEKAPEAISKAVATLPQN 261
+GD E + A A VA PQ+
Sbjct: 185 --HGDIAERKLAAAAKKNKVAVTPQS 208
Score = 30.7 bits (66), Expect = 0.20
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = +1
Query: 22 GYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEK 138
G+GFCE+ ++ A + LN ++ G+ +RV+ A ++
Sbjct: 53 GFGFCEFLHEQDVEYACQILNQVKLFGKPIRVNRASQDR 91
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 32.7 bits (71), Expect = 0.049
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQA 159
TG + YGF + ++ A+ ++ GY GR LR+ + + KSR + A
Sbjct: 220 TGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRI-SVASPKSRASIAA 269
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 32.3 bits (70), Expect = 0.065
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +1
Query: 4 ETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALM 165
+TGK KG+GF ++ D +T + AM E+G S R++ RM ++ M
Sbjct: 264 DTGKCKGFGFVDFPDIDTCMKAM------ELGHNSWRLEYGEDRSKRMRNKSPM 311
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 31.1 bits (67), Expect = 0.15
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
+G KGYGF ++ E A+ A LNG +G + + V
Sbjct: 421 SGISKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRIFV 457
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 31.1 bits (67), Expect = 0.15
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKS 141
++TG+P+G+GF Y + E+A+ A + I G+ + V A + S
Sbjct: 282 KDTGRPRGFGFVTY-ENESAVEATMSQPYITIHGKPVEVKRATPKAS 327
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 31.1 bits (67), Expect = 0.15
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +1
Query: 4 ETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQVE 183
E + +G+GF + + E A+ +NG ++G +L V +A + + Q + E
Sbjct: 253 EQRRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFREDK-------QNDENE 305
Query: 184 NPYGDPVE-PEKAPEAIS 234
+P+E E AP +S
Sbjct: 306 KNENEPIEASESAPTNVS 323
Score = 27.5 bits (58), Expect = 1.8
Identities = 19/82 (23%), Positives = 33/82 (40%)
Frame = +1
Query: 16 PKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQVENPYG 195
P G F + +QE A+ LNG + R + V A ++ Q + + +N G
Sbjct: 88 PSGIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKA----RPVQEQPIKDRKKSKNKNG 143
Query: 196 DPVEPEKAPEAISKAVATLPQN 261
+ E + E A + +N
Sbjct: 144 EEPETSTSVENAESAKGSSDEN 165
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 29.1 bits (62), Expect = 0.61
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 19 KGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSR 144
KGYGF + A+ A+ LNG G + L V+ A + R
Sbjct: 462 KGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFVNYAEKREDR 503
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 28.7 bits (61), Expect = 0.80
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
+E + Y F E+ + E A AM N+N + R +RV A
Sbjct: 40 KEKAVDRSYAFVEFDEPEDAKEAMENMNYSILCDRCIRVSPA 81
>SPBC83.13 |||mitochondrial tricarboxylic acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 293
Score = 28.3 bits (60), Expect = 1.1
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = -3
Query: 550 LVGWRSGIIVYRWLAGGGLDGI*VFVWAGLSP-GSKIGGTGLLG*SIVTAVAGSTILIMT 374
++G+ G+I + W+ + +F A L G ++G LG + A+AG M
Sbjct: 60 ILGFYQGLIPWAWIEASTKGAVLLFTSAELEYWGRRLG----LGATSAGAIAG-----MG 110
Query: 373 CACSSAYASCGFCKSMFRASL 311
+ AYA+ GFC M A +
Sbjct: 111 GGVAQAYATMGFCTCMKTAEV 131
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +3
Query: 438 PPILLPGDKPAQTNTYIPSNPP 503
PP+L G P QTNT P NPP
Sbjct: 173 PPVLSNGSFPRQTNT-APLNPP 193
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Frame = +3
Query: 405 AVTMLHPSNPVP-PILLPGDKPA----QTNTYIPSNPPPAN 512
A M+HPS +P P++ P P Q Y PS PPA+
Sbjct: 240 APNMVHPSQAIPNPVMQPSLVPQMPYPQNGMYNPSVAPPAS 280
>SPAC21E11.03c |pcr1|mts2|transcription factor
Pcr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 171
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Frame = +1
Query: 412 QCFIQVTLYLQSYYRVINQ-PKRILIYHPIHHQPTTDTQ*SRTATQPVQQFPSVHGC*SS 588
QC +++ L + N + + Y P+ P + S + P Q PS+ G +
Sbjct: 77 QCSVKIRSVLTDFQTAHNALHSQHMAYRPVQPPPGDNMLESVVSVSPTQMHPSLQGLPPN 136
Query: 589 RVXELPGSRGAP 624
+ ++P S P
Sbjct: 137 QHPQMPPSSQQP 148
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 423 PSNPVPPILLPGDKPAQTNTYIPSNPPP 506
P + PP+L GD+ +T IPS PP
Sbjct: 251 PISTAPPVLNIGDRSLETPPPIPSPRPP 278
>SPBPB21E7.05 ||SPAPB21E7.05, SPAPB21E7.05|sequence
orphan|Schizosaccharomyces pombe|chr 2|||Manual
Length = 127
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 406 QLQCFIQVTLYLQSYYRVINQ-PKRILIYHPI 498
+L+ F+Q L + YY + Q K ILI HP+
Sbjct: 89 KLRAFVQTFLAIGGYYSITTQIVKIILITHPV 120
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 417 LHPSNPVPPILLPGDKPAQTNTYIPSNPPPA 509
L P++ P L P P N Y+PSN PA
Sbjct: 1732 LQPASAHLPNLQPTLAPINQNAYVPSNIAPA 1762
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
TG PKG+ + E+ + +A+ LNG + R L+V
Sbjct: 92 TGHPKGFAYIEFSEPSLVPNALL-LNGSMLHERPLKV 127
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 439 LQSYYRVINQPKRILIYHPIHHQPTTD 519
LQ Y+ ++ K IL+YH IH + T+
Sbjct: 407 LQEYHVSVSSEKPILLYHLIHSKNLTN 433
>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 477
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 472 KRILIYHPIHHQPTTDTQ*SRTATQPVQQFPS 567
+RI ++H H P+ D + S T +Q Q++ S
Sbjct: 53 RRIPLFHESFHLPSLDPRASTTTSQKFQEYRS 84
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 26.2 bits (55), Expect = 4.3
Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Frame = +3
Query: 306 NPNEARNMLLQNPQLAYALLQAQV--IMRIVDPATAVTMLHPSNPVPPILLPGDKPAQTN 479
NP+ + ++ NP + + + P+ A+ H S P L + P Q++
Sbjct: 226 NPSVLQGQVMNNPTIPKGTPSTSIEGAKTSIPPSHAMQNPHNSFPASADRLQKNHPVQSS 285
Query: 480 TYIPSNPPPA 509
+ P P P+
Sbjct: 286 NFNPYTPAPS 295
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLR 114
R+TG K Y F E++ + A ++ Y + G+ L+
Sbjct: 140 RKTGSSKHYAFIEFESLDVANVVAETMHNYLLYGKLLQ 177
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.8 bits (54), Expect = 5.6
Identities = 21/74 (28%), Positives = 36/74 (48%)
Frame = +2
Query: 281 ANETLYSE*S**SSKHAFTKSATGIRAATGTGHNENCRSSHCSYNASSK*PCTSNLTTG* 460
++ETL S S S++ A+T S+ I A+T +S + + S+ P T + +
Sbjct: 213 SSETLTSV-SITSTESAYTSSSVDIAASTTASSTLPVSTSEATVSFSTDIPATPSTLSSP 271
Query: 461 *TSPNEYLYTIQST 502
+S + YL ST
Sbjct: 272 ASSSSSYLVETSST 285
>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 581
Score = 25.8 bits (54), Expect = 5.6
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -2
Query: 527 YCVSVVGWWWIGWY 486
Y S GW WIGW+
Sbjct: 205 YIASSQGWRWIGWW 218
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 5.6
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Frame = +3
Query: 438 PPILLPGDKPAQTNTYIPSN---PPPA--NHRYTIIPDRHPTSTT 557
PP+LLP P QT T S PPP+ N P R PTS +
Sbjct: 449 PPVLLPTLPPIQTTTIQTSREVAPPPSSINSNRAASPFR-PTSVS 492
>SPAC869.10c |||proline specific permease |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 552
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = -2
Query: 572 WTDGNCCTGWVAVRDYCVSVVGWWWIGWYISIRLGWF 462
WT GW+A+ + V+V+ +++ W+ WF
Sbjct: 150 WTYAVPTAGWIAILLFLVAVLNSFFVKWFGETEF-WF 185
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 273 LMKQMKLCIQNNPNEARNMLLQNPQLAYALLQA 371
L+K + I +N +++ ++L P LAY LLQA
Sbjct: 641 LVKLFDIAIPSNLSQSLSVLNFGPGLAYRLLQA 673
>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +3
Query: 426 SNPVPPILLPGDKPAQTNTYIPSNPPPAN 512
+NP PP PG K + P NP N
Sbjct: 208 NNPTPPTDFPGAKEQASTGNAPKNPVNEN 236
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.4 bits (53), Expect = 7.5
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +3
Query: 423 PSNPVPPILLPGDKPAQTNTYIPSNPPPANHRYTIIPDRHP 545
PS P PP +P + PS PPP+ IP + P
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAP 165
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.4 bits (53), Expect = 7.5
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +3
Query: 453 PGDKPAQTNTYIPSNPPPANHRYTIIPD 536
P KP T + PS PPP++ ++ + +
Sbjct: 399 PSAKPGATASTTPSEPPPSSIKHKTLQE 426
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +3
Query: 417 LHPSNPVPPILLPGDKPAQTNTYIPSNPPP 506
L P NP PP PG +P PS PPP
Sbjct: 4 LPPGNPPPPPPPPGFEP-------PSQPPP 26
>SPAC1296.04 |mug65||spore wall assembly protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 25.0 bits (52), Expect = 9.9
Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
Frame = -2
Query: 668 TAH--VLVEAAASMAXRGAPREPGSSXTREDQHPWTDGNCCTGWVAVRDYCVSVVGW-W- 501
T+H +L E + G P S D PW D + V+ + W W
Sbjct: 7 TSHLDILYENQRGIMLCGVPYFSEKSLLNFDPAPWVDQHFVASPVSTKTATCPDPSWEWA 66
Query: 500 WIGWYISI 477
W WYI +
Sbjct: 67 WQRWYIDM 74
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 417 LHPSNPVPPILLPGDKPA 470
L PS PV PI+L G+K A
Sbjct: 368 LDPSAPVNPIVLSGEKSA 385
>SPAC9E9.10c |cbh1|cbh|centromere binding protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 514
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 116 TLNERPPISYPLRFLMALKAVSWSLYSQN 30
+LN+ + PL+ + LKA+ W L+S N
Sbjct: 344 SLNQINILRDPLKAVNVLKAIRWMLWSWN 372
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 25.0 bits (52), Expect = 9.9
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Frame = +1
Query: 4 ETGKPKGYGFCEYKDQETAL---SAMRNLNGYE 93
ET KGYGF ++++++AL SAM L GY+
Sbjct: 332 ETNLCKGYGFACFEEEKSALICISAM-TLCGYQ 363
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,774,113
Number of Sequences: 5004
Number of extensions: 57005
Number of successful extensions: 233
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -