Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0893
(669 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 129 2e-30
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 53 2e-07
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 5e-06
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 47 1e-05
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 9e-05
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 40 0.002
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 40 0.002
SB_21461| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 39 0.004
SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.013
SB_26185| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.013
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.013
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 37 0.017
SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84) 36 0.023
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.023
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.052
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 35 0.052
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.069
SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.069
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 34 0.091
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.091
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 33 0.16
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 33 0.28
SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23) 33 0.28
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 33 0.28
SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11) 32 0.37
SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16) 32 0.49
SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.64
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.85
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035) 31 1.1
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 30 1.5
SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_57323| Best HMM Match : ShTK (HMM E-Value=0) 30 2.0
SB_31279| Best HMM Match : PI3K_C2 (HMM E-Value=0.76) 30 2.0
SB_16017| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-19) 30 2.0
SB_8542| Best HMM Match : PT (HMM E-Value=4) 29 2.6
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 29 3.4
SB_56900| Best HMM Match : I-set (HMM E-Value=8e-10) 29 4.5
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 29 4.5
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19) 29 4.5
SB_27469| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-08) 29 4.5
SB_4283| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_44752| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6) 29 4.5
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_2246| Best HMM Match : G-patch (HMM E-Value=5.5e-11) 28 6.0
SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_7951| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_37668| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_24012| Best HMM Match : RRM_1 (HMM E-Value=0.69) 28 7.9
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 28 7.9
SB_1889| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 28 7.9
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 129 bits (312), Expect = 2e-30
Identities = 59/86 (68%), Positives = 75/86 (87%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQV 180
RETGKPKGYGFCEYKDQETALSAMRNLNGYE+ GR+LRVD+A +EK++ E++++ +
Sbjct: 60 RETGKPKGYGFCEYKDQETALSAMRNLNGYELNGRALRVDSAASEKNKEEIKSMEMTARP 119
Query: 181 E-NPYGDPVEPEKAPEAISKAVATLP 255
E +PYG PV PE+APEAI++AVA+LP
Sbjct: 120 EVSPYGQPVPPEEAPEAITQAVASLP 145
Score = 113 bits (271), Expect = 2e-25
Identities = 52/75 (69%), Positives = 60/75 (80%)
Frame = +3
Query: 249 IAPEQMFELMKQMKLCIQNNPNEARNMLLQNPQLAYALLQAQVIMRIVDPATAVTMLHPS 428
+ PEQMFELMKQMK+CIQNNP EAR MLLQNPQLAYALLQAQV+M+IVDP A ++LH
Sbjct: 144 LPPEQMFELMKQMKVCIQNNPEEARQMLLQNPQLAYALLQAQVVMKIVDPVIAQSILHRP 203
Query: 429 NPVPPILLPGDKPAQ 473
N +P + PG P Q
Sbjct: 204 NEMPGAIQPGGAPLQ 218
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/56 (42%), Positives = 37/56 (66%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQGP 174
TGK KGYGF EY++Q++A A+ ++N +++GG+ LRV A T + M A+ P
Sbjct: 236 TGKHKGYGFIEYENQQSANDAIASMNLFDLGGQFLRVGRAITPPTSSAMAAINTTP 291
Score = 35.1 bits (77), Expect = 0.052
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +1
Query: 13 KPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
K KG+ F EY E A A+ +NG +GGR+++V
Sbjct: 141 KHKGFAFVEYDLPEAAQLALEQMNGVLLGGRNIKV 175
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 48.4 bits (110), Expect = 5e-06
Identities = 21/48 (43%), Positives = 34/48 (70%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSR 144
++TGK KG+ F Y+DQ + + A+ N NG ++GGR++RVD+ C+ R
Sbjct: 14 KKTGKQKGFCFLCYEDQRSTILAVDNFNGIKLGGRTIRVDH-CSNYRR 60
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/60 (33%), Positives = 34/60 (56%)
Frame = +1
Query: 4 ETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQVE 183
ET + KGYGF ++++ E A AM +NG+E+ GR L++ TE+ + + + E
Sbjct: 278 ETNRSKGYGFVQFREAEAAKRAMEQMNGFELAGRPLKI-GPVTERGDSSAYSFLDDEEYE 336
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 44.4 bits (100), Expect = 9e-05
Identities = 18/42 (42%), Positives = 28/42 (66%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
RE+G+ +G+GF +Y D ETA + + G E+ GR +R+D A
Sbjct: 321 RESGESRGFGFVDYDDVETAKKVLSEMAGAEVDGRQVRLDFA 362
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/36 (44%), Positives = 26/36 (72%)
Frame = +1
Query: 10 GKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
GKPKGYG+ EY+ + +A +A+ L+ E+ GR++ V
Sbjct: 208 GKPKGYGYVEYEQESSASTAVLTLDKTEVKGRTISV 243
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 39.9 bits (89), Expect = 0.002
Identities = 31/88 (35%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Frame = +1
Query: 10 GKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSL-------RVDNAC-----TEKSRMEM 153
GK KG+GF ++ E A A+ LNG EIGGR L R + A EK R E
Sbjct: 146 GKSKGFGFVSFETPEEAEEAVNVLNGKEIGGRRLWAGRAKKRAERAAEVKAEIEKKRQER 205
Query: 154 QALMQGPQVE-NPYGDPVEPEKAPEAIS 234
QG + DP++ E+ E S
Sbjct: 206 INRFQGVNLYIKNLDDPIDDERLREEFS 233
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
RETG+P+G+GF + +E A+ +G ++ GR ++V+ A
Sbjct: 131 RETGRPRGFGFVTFGSKEEMEKAIDEFDGQDLDGRPMKVNEA 172
>SB_21461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/50 (46%), Positives = 26/50 (52%)
Frame = +3
Query: 423 PSNPVPPILLPGDKPAQTNTYIPSNPPPANHRYTIIPDRHPTSTTIPVRP 572
P NP P +PGD P NT IP +PPP T IP P +T IP P
Sbjct: 60 PGNPPPNTPIPGDPP--PNTPIPGDPPP----NTPIPGNPPPNTPIPGDP 103
Score = 37.9 bits (84), Expect = 0.007
Identities = 22/50 (44%), Positives = 25/50 (50%)
Frame = +3
Query: 423 PSNPVPPILLPGDKPAQTNTYIPSNPPPANHRYTIIPDRHPTSTTIPVRP 572
P +P P +PGD P NT IP PPP T IP P +T IP P
Sbjct: 10 PGDPPPNTAIPGDPP--PNTTIPRAPPP----NTAIPGDRPPNTPIPGDP 53
Score = 37.5 bits (83), Expect = 0.010
Identities = 22/50 (44%), Positives = 27/50 (54%)
Frame = +3
Query: 423 PSNPVPPILLPGDKPAQTNTYIPSNPPPANHRYTIIPDRHPTSTTIPVRP 572
P +P P I +PG+ P NT IP +PPP T IP P +T IP P
Sbjct: 50 PGDPPPNIPIPGNPP--PNTPIPGDPPP----NTPIPGDPPPNTPIPGNP 93
Score = 33.5 bits (73), Expect = 0.16
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +3
Query: 423 PSNPVPPILLPGDKPAQTNTYIPSNPPP 506
P NP P +PGD P NT IP +PPP
Sbjct: 90 PGNPPPNTPIPGDPP--PNTPIPGDPPP 115
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
TG KGY FCEY D A++ LNG ++G + L V A
Sbjct: 710 TGLSKGYAFCEYVDLGITDVAIQGLNGMQLGDKKLIVQRA 749
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/48 (33%), Positives = 29/48 (60%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSR 144
RET +P+G+ F + ++ A+ L+G E GRS++V+ A + + R
Sbjct: 264 RETQRPRGFAFVTFGSKKNMEDAINELDGQEFDGRSMKVNQARSREQR 311
Score = 37.9 bits (84), Expect = 0.007
Identities = 14/42 (33%), Positives = 27/42 (64%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
RETG+P+G+GF + ++ A+ +G ++ GR ++V+ A
Sbjct: 44 RETGRPRGFGFVTFGSEDEMDKAIDKFDGEDLDGRPMKVNKA 85
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
RETG+P+G+GF + +E A+ +G + GR ++V+ A
Sbjct: 39 RETGRPRGFGFVTFGSKEEMEKAIDEFDGQDFDGRPMKVNQA 80
>SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 558
Score = 37.9 bits (84), Expect = 0.007
Identities = 20/44 (45%), Positives = 27/44 (61%)
Frame = +1
Query: 10 GKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKS 141
G+P+GY F E+K +E A A+R LN + R+L VD A KS
Sbjct: 428 GEPRGYCFVEFKKKEDARKALRGLNKKIVLSRALVVDWAHHHKS 471
>SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 414
Score = 37.1 bits (82), Expect = 0.013
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNL-----NGYEIGGRSLRVDNAC-TEKSRMEMQAL 162
RET + + +G+ ++D++ A AM+ + G EI GR+L ++ A E S
Sbjct: 11 RETRRSRNFGYVTFRDEQDAADAMKQMGGESGKGKEIFGRALNIEYAQEKESSAPRRGGY 70
Query: 163 MQGPQVENPYGDPVEPEKAP 222
GP P G P+ AP
Sbjct: 71 GGGPPRGPPRGHPMRGRGAP 90
>SB_26185| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 682
Score = 37.1 bits (82), Expect = 0.013
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +1
Query: 25 YGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
+GFCEY D E +L A+R L+ ++G +SL V
Sbjct: 88 FGFCEYSDPEASLRAIRLLHNLQVGDKSLVV 118
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 37.1 bits (82), Expect = 0.013
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNAC----TEKSRMEMQALMQ 168
R TG KGY EY+ + A SA+ LNG E+ G+++ VD A ++KSR +QA+
Sbjct: 328 RRTGFIKGYALVEYETFKEAQSALEALNGAEMLGQNISVDWAFIRGPSKKSR-SLQAVTS 386
Query: 169 GP---QVENP 189
P ++ NP
Sbjct: 387 LPLSKRIANP 396
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 36.7 bits (81), Expect = 0.017
Identities = 16/40 (40%), Positives = 27/40 (67%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
T K +G+GF E++ E +A+ N+N E+ GR++RV+ A
Sbjct: 42 TSKHRGFGFVEFEFAEDTAAAIDNMNESELFGRTIRVNLA 81
>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
Length = 509
Score = 36.3 bits (80), Expect = 0.023
Identities = 28/98 (28%), Positives = 35/98 (35%), Gaps = 7/98 (7%)
Frame = +3
Query: 300 QNNPNEARNMLLQNPQLAYALLQAQVIMRIVDPATAVTMLHPSNPVPPILLPGDKPAQTN 479
Q P+ R LL + QL + P T P+N PP KP T
Sbjct: 23 QQIPHHQRPPLLPSQQLPHNRTTTPTTPTTTTPPATTTPTKPTNTTPPATTTPTKPTTTT 82
Query: 480 ---TYIPSNP----PPANHRYTIIPDRHPTSTTIPVRP 572
T P+ P PPA T P +TT P +P
Sbjct: 83 PPATTTPTTPTTTTPPATTTPTKPTTTTPPATTTPTKP 120
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 36.3 bits (80), Expect = 0.023
Identities = 13/35 (37%), Positives = 26/35 (74%)
Frame = +1
Query: 13 KPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
+ +G+GF + + E A +A+++LNG E+ GR+L++
Sbjct: 97 RSRGFGFVTFANPEDAQTAVKSLNGKEVQGRTLKI 131
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 35.1 bits (77), Expect = 0.052
Identities = 13/39 (33%), Positives = 27/39 (69%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
++T K +GF Y + +A +A++++NG++IG + L+V
Sbjct: 297 KQTNMSKCFGFVSYDNVMSAQNAIQHMNGFQIGAKRLKV 335
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 35.1 bits (77), Expect = 0.052
Identities = 13/39 (33%), Positives = 27/39 (69%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
++T K +GF Y + +A +A++++NG++IG + L+V
Sbjct: 312 KQTNMSKCFGFVSYDNVMSAQNAIQHMNGFQIGAKRLKV 350
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 34.7 bits (76), Expect = 0.069
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
+ +G G+GF +Y E A A+ LNG+ IG + L+V
Sbjct: 82 KPSGWSYGFGFVDYNTTEDAQKAIDKLNGFTIGNKVLKV 120
>SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 34.7 bits (76), Expect = 0.069
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 4 ETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVD 120
+ KP+GY F EY+ + +A ++ +G +I GR + VD
Sbjct: 42 KASKPRGYAFIEYEHERDMHAAYKHADGKKIDGRRIVVD 80
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 34.3 bits (75), Expect = 0.091
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1
Query: 16 PKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVD 120
P G+ F EY+D A A+R L+G + R++RV+
Sbjct: 39 PPGFAFVEYEDYRDAEEAVRELDGANVCDRTIRVE 73
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 34.3 bits (75), Expect = 0.091
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
R TG+ GY F Y + + A A+R +NG + ++L+V A
Sbjct: 62 RATGQSLGYAFVNYDNPDDANKAVREMNGARLQNKTLKVSFA 103
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 16 PKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
P G+ FC ++D+ A A+R L+G I G+ RV+ A
Sbjct: 37 PPGFAFCVFEDRRDAEDAVRELDGRYICGQRARVELA 73
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 33.5 bits (73), Expect = 0.16
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 16 PKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
P G+ FC + D+ A A+R L+G I G+ +RV+ A
Sbjct: 67 PPGFAFCIFDDRRDAEDAVRELDGRYICGQRVRVELA 103
>SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1572
Score = 33.5 bits (73), Expect = 0.16
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +1
Query: 19 KGYGFCEYKDQETALSAMRNLNGYEIGGRSLR 114
+ Y F YK AL+AMRNLNG + LR
Sbjct: 85 RSYSFVSYKSHNNALNAMRNLNGKALDEFGLR 116
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVD 120
R+ +GYGF E+ D A A+ +LNG ++ G + V+
Sbjct: 716 RDISLKRGYGFVEFDDHRDAEDAVHDLNGRDLIGERVVVE 755
>SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23)
Length = 44
Score = 32.7 bits (71), Expect = 0.28
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNG 87
++TGK KG+ F Y+DQ + + A+ N NG
Sbjct: 14 KKTGKQKGFCFLCYEDQRSTILAVDNFNG 42
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 32.7 bits (71), Expect = 0.28
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLN 84
+++ K KGYGF +KD + AMR +N
Sbjct: 252 KKSNKSKGYGFVSFKDPNDFIKAMREMN 279
>SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11)
Length = 248
Score = 32.3 bits (70), Expect = 0.37
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNL 81
RETG+P+G+GF + ++T + ++NL
Sbjct: 116 RETGRPRGFGFVTLEAKKTRIKPLKNL 142
>SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16)
Length = 76
Score = 31.9 bits (69), Expect = 0.49
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 13 KPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSR 144
K + YGF + +E+A+ A+ +NG I G L V A + SR
Sbjct: 33 KIRDYGFVYFAKRESAVQAIDGINGAYIDGCKLEVSLAIPQSSR 76
>SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 31.5 bits (68), Expect = 0.64
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEI-GGRSLRVDNACTEKSRMEMQALMQG 171
TG KG+ FC + +Q +A A+ LN +I GR L + C KSR + ++G
Sbjct: 190 TGLNKGFAFCTFTEQTSAYQAITTLNDKDIRPGRRLAI---C--KSRSNSRLFVKG 240
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 31.1 bits (67), Expect = 0.85
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +1
Query: 13 KPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALM 165
K KG+GF + +E A A+ ++ IGG+ ++ + A + + + + L+
Sbjct: 552 KSKGFGFVSFVRREDAAKAIAEMDSVTIGGKQVKTNWAARKNNPTQTKPLV 602
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
+E+G+ +G+GF + + A+ +N +GGR++ V
Sbjct: 43 KESGRSRGFGFVLLQSADQIAPAIEKMNQSSVGGRNITV 81
>SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035)
Length = 258
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 13 KPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
+ +G+GF ++QE R +G+E GR L+V A
Sbjct: 81 RSRGFGFVTLENQEDLEDVTRKFDGFEYEGRRLKVAEA 118
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
R+TG KG+G+ ++ ++ + A++ +N E GR +RV
Sbjct: 91 RKTGIGKGFGYVLFESKDAVVFALK-MNNAEFKGRKIRV 128
>SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2851
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +3
Query: 396 PATAVTMLHPSNPVPPILLPGDKPAQTNTYI-PSNPPPANHRYTIIPDRHPTST 554
PAT P+ P P + PAQ + P P P + T P RHPT T
Sbjct: 99 PATTTV---PAPPPSSTTAPVNAPAQQQPLLQPQRPTPPSSYPTQPPSRHPTQT 149
>SB_57323| Best HMM Match : ShTK (HMM E-Value=0)
Length = 911
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/51 (31%), Positives = 20/51 (39%)
Frame = +3
Query: 411 TMLHPSNPVPPILLPGDKPAQTNTYIPSNPPPANHRYTIIPDRHPTSTTIP 563
T + P PVPP P +T P+ PP T +P P T P
Sbjct: 680 TTVSPGTPVPPTDDPDCTTETPDTQPPTQPPVTQPPDTPVPPTQPPVTDAP 730
>SB_31279| Best HMM Match : PI3K_C2 (HMM E-Value=0.76)
Length = 275
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Frame = +3
Query: 384 RIVDPATAVTMLHPSNPVPPILLPGDKP-----AQTNTYIPSNPP 503
R+ P TA T +HP P P + P D P A YI PP
Sbjct: 203 RLQPPLTAATTIHPPVPPPSVPPPPDTPGVESLASVRRYIMYYPP 247
>SB_16017| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-19)
Length = 879
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 127 CTEKSRMEMQALMQGPQVENPYGDPVEPEKAPEAISKAVATLPQNRCL 270
C ++R + L Q P + Y D ++ ++A I KA +T N CL
Sbjct: 517 CERRTRATARRLHQTPDLMKSYDDIIKEQEARGFIEKAPSTPSLNDCL 564
>SB_8542| Best HMM Match : PT (HMM E-Value=4)
Length = 650
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = +3
Query: 339 NPQLAYALLQAQVIMRIVDPATAVTMLHPS-NPVPPILLPGDKPAQTNTYIPSNPPPANH 515
NPQ Y L R +PS NP P LPG+ Q Y+P NP P +
Sbjct: 361 NPQSRY-YLYGNPQSRYYPSGNPQPRYYPSGNPQPRYYLPGNP--QPRYYLPGNPQPRYY 417
Query: 516 R 518
R
Sbjct: 418 R 418
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = +3
Query: 432 PVPPILLPGDKPAQTNTYIPSNPPPANHRYTIIPDRHPTSTTIP 563
P PP LPG +P Q NP T P +P +T P
Sbjct: 741 PPPPGQLPGQQPGQAGGRPGLNPQGQVTTATTAPSSNPNESTTP 784
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Frame = +3
Query: 309 PNEARNMLLQNPQLAYALLQAQVIMRIVDPATAVTMLHPSNPVPPILLPGDKP---AQTN 479
PN ++ + NP + L + PA+ + P+ P P I P + A N
Sbjct: 234 PNPSKAIATPNPPMPETPLPPATPNPFIPPASPNPSIPPAPPNPSIPAPPNPSIPLAPPN 293
Query: 480 TYIPSNPP 503
YIP PP
Sbjct: 294 PYIPPAPP 301
>SB_56900| Best HMM Match : I-set (HMM E-Value=8e-10)
Length = 968
Score = 28.7 bits (61), Expect = 4.5
Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Frame = +3
Query: 384 RIVDPATAVTMLH---PSNPVPPILLPGDKPAQ-TNTYIPSNPPPANHRYTIIPDRHPTS 551
R V P +H PS P P + AQ T Y PS P P + YT +
Sbjct: 432 RPVPPRLHTEYIHAYTPSTPTPTHRVHPRLHAQYTLAYTPSTPTPTHAEYTHAYTPSTQT 491
Query: 552 TTIPVRP 572
T PV P
Sbjct: 492 PTCPVHP 498
Score = 28.7 bits (61), Expect = 4.5
Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Frame = +3
Query: 384 RIVDPATAVTMLH---PSNPVPPILLPGDKPAQ-TNTYIPSNPPPANHRYTIIPDRHPTS 551
R V P +H PS P P + AQ T Y PS P P + YT +
Sbjct: 615 RPVPPRLHTEYIHAYTPSTPTPTHRVHPRLHAQYTLAYTPSTPTPTHAEYTHAYTPSTQT 674
Query: 552 TTIPVRP 572
T PV P
Sbjct: 675 PTCPVHP 681
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +3
Query: 423 PSNPVPPILL-PGDKPAQTNTYIPSNPPPANHRYT 524
PS P P + P T+TY PS P P + YT
Sbjct: 855 PSTPKPTHRVHPSLHAGYTHTYTPSTPTPTHAEYT 889
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +1
Query: 4 ETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRME 150
+TG KG+ F + + + +A+ +NG + R + V A ++S+ E
Sbjct: 137 DTGNSKGFAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKESKGE 185
>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYE 93
TG+ KG+ + Y +A+ A LNG+E
Sbjct: 239 TGESKGFAYVTYNSVGSAIYAKEKLNGFE 267
>SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19)
Length = 168
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 10 GKPKGYGFCEYKDQETALSAMRNLNGYEI 96
G+ +GY F Y ++ A ++ LN YEI
Sbjct: 111 GQNRGYAFVVYTSKDDAKRCVKTLNNYEI 139
>SB_27469| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-08)
Length = 341
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = -3
Query: 184 FLPEVLALELAFPFAISLYKHYLLLTNDHQFRIH*DFSWHSKPFPGLYIHKTHNLWVYRF 5
FL ++L L F ++++ H +L+ N ++ F+W P LYI+ N+ VY F
Sbjct: 199 FLMTFVSL-LCFLPSVAIASHEILMNNGDDNKLDIHFAW-----PILYINSFINVLVYSF 252
Query: 4 R 2
R
Sbjct: 253 R 253
>SB_4283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 133 EKSRMEMQALMQGPQVENPYGDPVEPEKAPEAISKAV 243
EK+ ME G ++NP G+PV K E+ K +
Sbjct: 15 EKTHMESGIHALGSGIQNPIGEPVMGRKKAESTKKKI 51
>SB_44752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 421
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3
Query: 432 PVPPILLPGDKPAQTNTYIPSNPPPANHRYTII 530
P PP P D + +P PPP RYT++
Sbjct: 210 PPPPPPPPEDDSIHNHEDLPPPPPPKESRYTVM 242
>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1212
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/59 (32%), Positives = 23/59 (38%)
Frame = +3
Query: 396 PATAVTMLHPSNPVPPILLPGDKPAQTNTYIPSNPPPANHRYTIIPDRHPTSTTIPVRP 572
P +AV + P P PP P P Q S P P + PD PT+ P P
Sbjct: 1050 PPSAVPIPPPRKPSPPPSEPAPPPRQPPPPSTSQPVPPPRQ----PDPIPTNPAHPTEP 1104
>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
Length = 496
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +3
Query: 420 HPSNPVPPILLPGDKPAQTNTYIPSNP--PPANHRYTIIPDRHPTS 551
+P +P+ LP P Y S+P PP+ RY P R+P+S
Sbjct: 320 YPPSPIRYPPLPSRYPPSPPRYPSSHPRYPPSPPRYPPSPPRYPSS 365
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +3
Query: 450 LPGDKPAQTNTYIPSNP--PPANHRYTIIPDRHPTS 551
LP P Y PS P PP+ HRY P R+P S
Sbjct: 288 LPPRYPPSPPRYPPSPPRYPPSLHRYPQSPLRYPPS 323
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEI 96
+G KG+ FC + +++ A +A++ L+ EI
Sbjct: 189 SGLTKGFAFCTFSNKDEAQNAVKKLDNKEI 218
>SB_2246| Best HMM Match : G-patch (HMM E-Value=5.5e-11)
Length = 396
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 31 FCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSR 144
F E+ E+A+ A+ +LNG GGR+++ + +K R
Sbjct: 351 FVEFTRMESAIKAVVDLNGRYFGGRTVKANFFNLDKFR 388
>SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 25 YGFCEYKDQETALSAMRNLNGYEIGGRSLRVD 120
YGF EY+D A AMR N ++ G + V+
Sbjct: 41 YGFIEYEDPRDAEEAMRRENNRKLFGSRIVVE 72
>SB_7951| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 74
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +3
Query: 399 ATAVTMLHPSNPVPPILLPG--DKPAQTNTYIPSNPPPANHRYTI 527
A A+T HP PVPP PG + +T I P P YTI
Sbjct: 27 AVAITKRHPRPPVPP---PGAAESCQETTLVILYMPEPILRNYTI 68
>SB_37668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 10 GKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
G KG Y+D TA +A+ NG + G+S++V+ A
Sbjct: 215 GSSKGECTVTYEDPPTASAAIEWFNGKDFMGQSIKVELA 253
>SB_24012| Best HMM Match : RRM_1 (HMM E-Value=0.69)
Length = 166
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 4 ETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRS 108
++G+ K YGF +KD+E AM N + G +S
Sbjct: 98 KSGRSKKYGFVFFKDEEACEKAMGNQPHFIEGQKS 132
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 19 KGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKS 141
+G+GF + A A LNG + GR + V + C E+S
Sbjct: 124 EGFGFVTFNTAAEANKAREKLNGTIVDGRKVEV-SLCMEQS 163
>SB_1889| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 28
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +1
Query: 10 GKPKGYGFCEYKDQ 51
GKPKGYG+ EY+ +
Sbjct: 15 GKPKGYGYVEYEQE 28
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 4 ETGKPKGYGFCEYKDQETALSAM 72
+TGK KG+G+ Y++ E+A A+
Sbjct: 98 QTGKSKGFGYVTYENAESAQRAL 120
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,328,192
Number of Sequences: 59808
Number of extensions: 446865
Number of successful extensions: 1633
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 1333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1598
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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