Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0893
(669 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 89 3e-18
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 46 2e-05
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 46 3e-05
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 44 7e-05
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 44 1e-04
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 42 5e-04
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 42 5e-04
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 42 5e-04
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 40 0.001
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 40 0.002
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 40 0.002
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 40 0.002
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 40 0.002
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 40 0.002
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 39 0.003
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 38 0.006
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 37 0.011
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 37 0.011
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 37 0.011
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 37 0.011
Z75552-9|CAA99945.2| 705|Caenorhabditis elegans Hypothetical pr... 37 0.015
Z75551-6|CAA99937.2| 705|Caenorhabditis elegans Hypothetical pr... 37 0.015
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 36 0.020
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 36 0.020
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 36 0.026
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 36 0.034
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 35 0.045
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 35 0.045
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 35 0.045
U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical pr... 35 0.060
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 34 0.079
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 34 0.079
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 34 0.079
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 34 0.079
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 34 0.079
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 34 0.079
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 34 0.079
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 34 0.079
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 34 0.079
Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical pr... 34 0.10
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 33 0.14
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 33 0.14
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 32 0.32
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 32 0.42
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 32 0.42
AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical ... 31 0.56
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 31 0.56
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 31 0.74
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 31 0.74
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 31 0.74
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 31 0.74
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 31 0.98
Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical pr... 31 0.98
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 30 1.3
AC084197-23|AAM44389.1| 610|Caenorhabditis elegans Hypothetical... 30 1.3
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 30 1.7
U58762-3|AAM15611.1| 331|Caenorhabditis elegans Hypothetical pr... 30 1.7
U58762-2|AAK39302.1| 722|Caenorhabditis elegans Hypothetical pr... 30 1.7
U58762-1|AAK39301.1| 732|Caenorhabditis elegans Hypothetical pr... 30 1.7
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 30 1.7
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 30 1.7
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 30 1.7
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 29 2.3
AL110485-29|CAB60376.3| 732|Caenorhabditis elegans Hypothetical... 29 2.3
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z79601-3|CAB01883.2| 640|Caenorhabditis elegans Hypothetical pr... 29 3.9
U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical pr... 29 3.9
U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical pr... 29 3.9
AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical ... 29 3.9
AC024777-5|AAF60564.1| 506|Caenorhabditis elegans Hypothetical ... 29 3.9
U53338-2|AAA96190.2| 558|Caenorhabditis elegans Ammonium transp... 28 5.2
AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ... 28 5.2
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 28 6.9
U53338-3|AAA96191.1| 534|Caenorhabditis elegans Ammonium transp... 28 6.9
U46673-7|AAC48154.1| 811|Caenorhabditis elegans Beta-catenin/ar... 28 6.9
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 28 6.9
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 28 6.9
AF063646-1|AAC17424.1| 811|Caenorhabditis elegans beta-catenin/... 28 6.9
AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen prot... 28 6.9
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e... 28 6.9
AC006708-23|AAF60414.1| 975|Caenorhabditis elegans Paz/piwi dom... 28 6.9
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 27 9.1
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 27 9.1
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 89.0 bits (211), Expect = 3e-18
Identities = 46/86 (53%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQ- 177
RETGKPKGYGF E+ D +TA A+RNLNGYE+ GR LRVD+A + E + P
Sbjct: 53 RETGKPKGYGFIEFPDIQTAEVAIRNLNGYELSGRILRVDSAAGGMNMEEFGSSSNAPAP 112
Query: 178 -VENPYGDPVEPEKAPEAISKAVATL 252
ENPYG + KAPE IS+ VA+L
Sbjct: 113 VEENPYGPECDAGKAPERISQTVASL 138
Score = 80.2 bits (189), Expect = 1e-15
Identities = 34/58 (58%), Positives = 49/58 (84%)
Frame = +3
Query: 249 IAPEQMFELMKQMKLCIQNNPNEARNMLLQNPQLAYALLQAQVIMRIVDPATAVTMLH 422
+APE+MFELMKQ++ ++NNP+E L+++PQ+AYA+LQA V+MRIVDP TA+ +LH
Sbjct: 138 LAPEKMFELMKQLQESLKNNPSELHKFLVEHPQIAYAVLQAAVVMRIVDPQTALGLLH 195
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/42 (45%), Positives = 29/42 (69%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
RETG+P+G+ F E+ ++ +A A+ +NG E GR LRV+ A
Sbjct: 40 RETGRPRGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLRVNLA 81
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/42 (45%), Positives = 28/42 (66%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
RETG+P+G+ F E+ ++ A A+ LNG GR+LRV+ A
Sbjct: 41 RETGRPRGFAFVEFSEEAGAQRAVEQLNGVAFNGRNLRVNYA 82
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 44.4 bits (100), Expect = 7e-05
Identities = 18/42 (42%), Positives = 28/42 (66%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
RETG+P+G+ F E+ ++ A A+ NG + GR+LRV+ A
Sbjct: 39 RETGRPRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRVNLA 80
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/41 (43%), Positives = 27/41 (65%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDN 123
++TGK KG+ F YKDQ + + A+ N NG + R +RVD+
Sbjct: 73 KDTGKSKGFAFLCYKDQRSTILAVDNFNGISLHKRMIRVDH 113
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/59 (32%), Positives = 33/59 (55%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQVE 183
TG K + F EY+ E AL A ++NG +GGR+L+V++ ++ R+ P ++
Sbjct: 139 TGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKVNSMMFQEMRLPQNMPQAQPIID 197
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/32 (28%), Positives = 21/32 (65%)
Frame = +1
Query: 19 KGYGFCEYKDQETALSAMRNLNGYEIGGRSLR 114
+G+G+ E+ + + A+ +N +++GG+ LR
Sbjct: 248 RGFGYLEFNNLTSQSEAIAGMNMFDLGGQYLR 279
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/59 (32%), Positives = 33/59 (55%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQVE 183
TG K + F EY+ E AL A ++NG +GGR+L+V++ ++ R+ P ++
Sbjct: 139 TGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKVNSMMFQEMRLPQNMPQAQPIID 197
Score = 30.7 bits (66), Expect = 0.98
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +1
Query: 19 KGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACT 132
+G+G+ E+ + + A+ +N +++GG+ LRV T
Sbjct: 248 RGFGYLEFNNLTSQSEAIAGMNMFDLGGQYLRVGKCVT 285
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/59 (32%), Positives = 33/59 (55%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQVE 183
TG K + F EY+ E AL A ++NG +GGR+L+V++ ++ R+ P ++
Sbjct: 139 TGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKVNSMMFQEMRLPQNMPQAQPIID 197
Score = 30.7 bits (66), Expect = 0.98
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +1
Query: 19 KGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACT 132
+G+G+ E+ + + A+ +N +++GG+ LRV T
Sbjct: 248 RGFGYLEFNNLTSQSEAIAGMNMFDLGGQYLRVGKCVT 285
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/49 (30%), Positives = 30/49 (61%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEM 153
T K KGYGF ++D E + AMR ++G +G R +++ + ++ +++
Sbjct: 240 TNKSKGYGFVSFRDSEDYVRAMREMDGKYVGNRPIKLRKSAWKERNIDV 288
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +1
Query: 10 GKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSR 144
G KGY F EY D A+ LNG ++G + L V AC + R
Sbjct: 328 GNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLACANQQR 372
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +1
Query: 10 GKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSR 144
G KGY F EY D A+ LNG ++G + L V AC + R
Sbjct: 328 GNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLACANQQR 372
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +1
Query: 10 GKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSR 144
G KGY F EY D A+ LNG ++G + L V AC + R
Sbjct: 303 GNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLACANQQR 347
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +1
Query: 10 GKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSR 144
G KGY F EY D A+ LNG ++G + L V AC + R
Sbjct: 306 GNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLACANQQR 350
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +1
Query: 4 ETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVD 120
E GKP+GY F EY D+ +A + +G ++ G+ L VD
Sbjct: 139 EAGKPRGYAFIEYSDKAEMHTAYKKADGIKVDGKRLVVD 177
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/51 (37%), Positives = 31/51 (60%)
Frame = +1
Query: 4 ETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQ 156
E+GK +G+GF E+ E A A+ N+N E+ G+++RV+ A K+ Q
Sbjct: 47 ESGKHRGFGFVEFDMAEDAAMAIDNMNESELFGKTIRVNFARPPKATERSQ 97
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/46 (36%), Positives = 29/46 (63%)
Frame = +1
Query: 4 ETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKS 141
+T K KGYGF + +++ A +A+ +NG IG R++R + A + S
Sbjct: 171 QTQKSKGYGFVSFPNKQNAENAIAGMNGKWIGKRAVRTNWAARKNS 216
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 13 KPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLR 114
K + Y F Y+ +E A A+ +NG E+ G +R
Sbjct: 270 KTQRYAFVRYEKKECATKAIMEMNGKEMAGNQVR 303
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 37.1 bits (82), Expect = 0.011
Identities = 19/44 (43%), Positives = 25/44 (56%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEK 138
T K KGYGF Y +E A A+ +NG +G R++R N T K
Sbjct: 59 TTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRT-NWATRK 101
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +1
Query: 13 KPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLR 114
K +GY F ++ +++ A A+ +N ++GG+ +R
Sbjct: 160 KMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVR 193
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 37.1 bits (82), Expect = 0.011
Identities = 19/44 (43%), Positives = 25/44 (56%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEK 138
T K KGYGF Y +E A A+ +NG +G R++R N T K
Sbjct: 69 TTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRT-NWATRK 111
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +1
Query: 13 KPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLR 114
K +GY F ++ +++ A A+ +N ++GG+ +R
Sbjct: 170 KMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVR 203
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 37.1 bits (82), Expect = 0.011
Identities = 19/44 (43%), Positives = 25/44 (56%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEK 138
T K KGYGF Y +E A A+ +NG +G R++R N T K
Sbjct: 172 TTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRT-NWATRK 214
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +1
Query: 13 KPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLR 114
K +GY F ++ +++ A A+ +N ++GG+ +R
Sbjct: 273 KMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVR 306
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 37.1 bits (82), Expect = 0.011
Identities = 19/44 (43%), Positives = 25/44 (56%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEK 138
T K KGYGF Y +E A A+ +NG +G R++R N T K
Sbjct: 140 TTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRT-NWATRK 182
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +1
Query: 13 KPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLR 114
K +GY F ++ +++ A A+ +N ++GG+ +R
Sbjct: 241 KMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVR 274
>Z75552-9|CAA99945.2| 705|Caenorhabditis elegans Hypothetical
protein W04D2.6a protein.
Length = 705
Score = 36.7 bits (81), Expect = 0.015
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +1
Query: 10 GKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
GK +G+GFC + D E L A+R L+ + +G + L V
Sbjct: 84 GKLQGFGFCHFTDLEGTLRALRILHEFHLGDKKLTV 119
>Z75551-6|CAA99937.2| 705|Caenorhabditis elegans Hypothetical
protein W04D2.6a protein.
Length = 705
Score = 36.7 bits (81), Expect = 0.015
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +1
Query: 10 GKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
GK +G+GFC + D E L A+R L+ + +G + L V
Sbjct: 84 GKLQGFGFCHFTDLEGTLRALRILHEFHLGDKKLTV 119
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 36.3 bits (80), Expect = 0.020
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +1
Query: 10 GKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQA 159
GKPKG+GF + DQ+ A A+ LN + G ++ + C + + E A
Sbjct: 275 GKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKL-SVCRAQKKSERSA 323
Score = 31.1 bits (67), Expect = 0.74
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +1
Query: 4 ETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRME 150
+ G KGYGF ++ + +A +A+ +NG + + + V RM+
Sbjct: 180 DEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMK 228
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 36.3 bits (80), Expect = 0.020
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +1
Query: 10 GKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQA 159
GKPKG+GF + DQ+ A A+ LN + G ++ + C + + E A
Sbjct: 275 GKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKL-SVCRAQKKSERSA 323
Score = 31.1 bits (67), Expect = 0.74
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +1
Query: 4 ETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRME 150
+ G KGYGF ++ + +A +A+ +NG + + + V RM+
Sbjct: 180 DEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMK 228
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 35.9 bits (79), Expect = 0.026
Identities = 19/44 (43%), Positives = 25/44 (56%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEK 138
T K KGYGF Y +E A A+ +NG +G R++R N T K
Sbjct: 169 TNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRT-NWATRK 211
Score = 31.1 bits (67), Expect = 0.74
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLR 114
T K +GY F +++ +E+A A+ +N +IGG+ +R
Sbjct: 286 TFKIQGYAFVKFETKESAARAIVQMNNADIGGQIVR 321
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 35.5 bits (78), Expect = 0.034
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
TG+ GYGF Y +E AL A+ + NG + ++++V A
Sbjct: 79 TGQSLGYGFVNYVREEDALRAVSSFNGLRLQNKTIKVSYA 118
Score = 31.1 bits (67), Expect = 0.74
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
T + KGY F + A +AM +LNG + G++L+V
Sbjct: 410 TQQCKGYAFVSMSNYTEAYNAMLSLNGTNLAGKTLQV 446
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 35.1 bits (77), Expect = 0.045
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +1
Query: 22 GYGFCEYKDQETALSAMRNLNGYEIGGRSLRVD 120
G+GF E+ D+ A A+ +LNG E+GG + +D
Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKELGGERVILD 69
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 35.1 bits (77), Expect = 0.045
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +1
Query: 22 GYGFCEYKDQETALSAMRNLNGYEIGGRSLRVD 120
G+GF E+ D+ A A+ +LNG E+GG + +D
Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKELGGERVILD 69
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 35.1 bits (77), Expect = 0.045
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +1
Query: 22 GYGFCEYKDQETALSAMRNLNGYEIGGRSLRVD 120
G+GF E+ D+ A A+ +LNG E+GG + +D
Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKELGGERVILD 69
>U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical
protein R144.4b protein.
Length = 362
Score = 34.7 bits (76), Expect = 0.060
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +3
Query: 423 PSNPVPPILLPGDKPAQTNTYIPSNPPPANHRYTIIPDRHPTSTTIPVRP 572
P P PP+ +P KP P PPPA + + DR T P+RP
Sbjct: 157 PPPPPPPVSVPSSKPT------PPPPPPAQQKPSFQSDREQFRTMRPLRP 200
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 34.3 bits (75), Expect = 0.079
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV---DNACTEKSRMEMQALMQG 171
++TG KG+ E+ E A++A L+GY GR + + D T++ E + +
Sbjct: 314 KKTGACKGFAIVEFVFPEAAVAAYSALDGYVFKGRMMHILPGDEKRTKEGEEESEVVPDD 373
Query: 172 PQVENPYGDPVEPEKAPEAISK 237
P +NP + EK ++ +
Sbjct: 374 P--DNPLKAEAKKEKKKKSFKE 393
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 34.3 bits (75), Expect = 0.079
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
T K +GF Y++ ++A +A+ +NG++IG + L+V
Sbjct: 372 TNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKV 408
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 34.3 bits (75), Expect = 0.079
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
T K +GF Y++ ++A +A+ +NG++IG + L+V
Sbjct: 536 TNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKV 572
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 34.3 bits (75), Expect = 0.079
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
T K +GF Y++ ++A +A+ +NG++IG + L+V
Sbjct: 536 TNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKV 572
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 34.3 bits (75), Expect = 0.079
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 4 ETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
E G KGYGF ++ +E A +A++ +NG + G+ + V
Sbjct: 155 EDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 192
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 34.3 bits (75), Expect = 0.079
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
T K +GF Y++ ++A +A+ +NG++IG + L+V
Sbjct: 465 TNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKV 501
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 34.3 bits (75), Expect = 0.079
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
T K +GF Y++ ++A +A+ +NG++IG + L+V
Sbjct: 536 TNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKV 572
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 34.3 bits (75), Expect = 0.079
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 4 ETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
E G KGYGF ++ +E A +A++ +NG + G+ + V
Sbjct: 92 EDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 129
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 34.3 bits (75), Expect = 0.079
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 4 ETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
E G KGYGF ++ +E A +A++ +NG + G+ + V
Sbjct: 155 EDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 192
>Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical
protein T12D8.2 protein.
Length = 207
Score = 33.9 bits (74), Expect = 0.10
Identities = 13/42 (30%), Positives = 27/42 (64%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
R++G KG+ + +++++ +A+ LNG + G R L+V+ A
Sbjct: 47 RDSGSFKGFAYVTFENEQQMNTAISGLNGADFGNRVLKVNRA 88
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSR 144
TG+ KG + E+ D+E+ + LNG + G L++ C E++R
Sbjct: 62 TGRSKGICYVEFWDEESVPLGLA-LNGQRLMGAPLQIQRTCAERNR 106
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSR 144
TG+ KG + E+ D+E+ + LNG + G L++ C E++R
Sbjct: 207 TGRSKGICYVEFWDEESVPLGLA-LNGQRLMGAPLQIQRTCAERNR 251
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 32.3 bits (70), Expect = 0.32
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVD 120
R TG KGY EY+ Q+ A A+ N ++ G++++VD
Sbjct: 90 RRTGFLKGYALVEYETQKEANEAIDQSNDTDLLGQNVKVD 129
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 31.9 bits (69), Expect = 0.42
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
R T + K +GF Y + ++ +A+ +NG++IG + L+V
Sbjct: 464 RATNQSKCFGFVSYDNIHSSQAAITAMNGFQIGMKRLKV 502
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 31.9 bits (69), Expect = 0.42
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
R T + K +GF Y + ++ +A+ +NG++IG + L+V
Sbjct: 464 RATNQSKCFGFVSYDNIHSSQAAITAMNGFQIGMKRLKV 502
>AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical
protein M01E10.2 protein.
Length = 1286
Score = 31.5 bits (68), Expect = 0.56
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 7/98 (7%)
Frame = +3
Query: 297 IQNNPNEARNMLLQNPQLAYALLQAQVIMRIVDPATAVTMLHPSNPVPPILLPGDKP--- 467
+++N + + + P + + V P++A T LHPS PP++ + P
Sbjct: 479 LESNEEDYESTVTSKPVIMFTTESTVVHNLPTKPSSAPT-LHPSTFSPPLVTSSENPFTF 537
Query: 468 ----AQTNTYIPSNPPPANHRYTIIPDRHPTSTTIPVR 569
T+T P PP+ + + PTST P R
Sbjct: 538 TLDTTPTSTVTPMTSPPST-----VTETTPTSTVTPRR 570
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 31.5 bits (68), Expect = 0.56
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA---CTEKSRMEMQALMQG 171
R T K +GYGF KD+ +A A ++ N I GR V+ A ++ +++ AL G
Sbjct: 70 RNTQKSRGYGFVTMKDRASAERACKDPNPI-IDGRKANVNLAYLGAKPRTNVQLAALAAG 128
Query: 172 PQVENP 189
QV+ P
Sbjct: 129 -QVQLP 133
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 31.1 bits (67), Expect = 0.74
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 13 KPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVD 120
+P G+ F EY D A A+R L+G I G RV+
Sbjct: 37 RPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVE 72
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 31.1 bits (67), Expect = 0.74
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 13 KPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVD 120
+P G+ F EY D A A+R L+G I G RV+
Sbjct: 37 RPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVE 72
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 31.1 bits (67), Expect = 0.74
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 13 KPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVD 120
+P G+ F EY D A A+R L+G I G RV+
Sbjct: 37 RPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVE 72
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 31.1 bits (67), Expect = 0.74
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIG-GRSLRVD 120
+G +GY F Y ++E A +A + +G+EI G+ L+V+
Sbjct: 237 SGASRGYAFVTYCNKEDAAAAAKTYDGHEISTGKPLKVN 275
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 30.7 bits (66), Expect = 0.98
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 22 GYGFCEYKDQETALSAMRNLNGYEIGG 102
G+GF +++DQ A A+ +LNG E+ G
Sbjct: 36 GFGFVDFQDQRDADDAVHDLNGKELCG 62
>Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical protein
F43C1.1 protein.
Length = 1036
Score = 30.7 bits (66), Expect = 0.98
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +3
Query: 342 PQLAYALLQAQVIMRIVDPATAVTMLHPSNPVPPIL--LPGDKPAQTNTYIPSNPPP 506
P +A + Q+++ + PA + HPS PVPP + + P+ +PS+ PP
Sbjct: 918 PDIAIPKIDEQLVLAV--PALILPEYHPSPPVPPPIPAIRHRTPSPPPPPLPSSTPP 972
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEK 138
R +G +G+GF + E A +A L ++ G +RVD + T++
Sbjct: 111 RPSGNSRGFGFIYFNLIEDATAARDKLCNTDLDGHKIRVDFSLTKR 156
>AC084197-23|AAM44389.1| 610|Caenorhabditis elegans Hypothetical
protein Y73B6BL.33 protein.
Length = 610
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQ 156
TG+P G + E+K+ E A AM N + EI R + V +++ E +
Sbjct: 98 TGRPNGEAYVEFKNTEEAGKAMEN-DRKEISNRYIEVFTVEADEAEFEFR 146
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRM 147
R +G PKG+ + E+ ++E +A+ + + GR ++VD T K M
Sbjct: 113 RFSGHPKGFAYVEFTEKEGMQNALAMTDSL-LRGRQIKVDPKRTNKPGM 160
>U58762-3|AAM15611.1| 331|Caenorhabditis elegans Hypothetical
protein T27F7.2c protein.
Length = 331
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = -3
Query: 169 LALELAFPFAI--SLYKHYLLLTNDHQFRIH*DFSWHSKPFPGLYIHKTHN 23
LAL + P + S HYL++ N+ FR+ S KPFP L + TH+
Sbjct: 204 LALSMRVPCSHNPSGISHYLIIRNEQGFRL--KLSATKKPFPTLQMMLTHH 252
>U58762-2|AAK39302.1| 722|Caenorhabditis elegans Hypothetical
protein T27F7.2b protein.
Length = 722
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = -3
Query: 169 LALELAFPFAI--SLYKHYLLLTNDHQFRIH*DFSWHSKPFPGLYIHKTHN 23
LAL + P + S HYL++ N+ FR+ S KPFP L + TH+
Sbjct: 573 LALSMRVPCSHNPSGISHYLIIRNEQGFRL--KLSATKKPFPTLQMMLTHH 621
>U58762-1|AAK39301.1| 732|Caenorhabditis elegans Hypothetical
protein T27F7.2a protein.
Length = 732
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = -3
Query: 169 LALELAFPFAI--SLYKHYLLLTNDHQFRIH*DFSWHSKPFPGLYIHKTHN 23
LAL + P + S HYL++ N+ FR+ S KPFP L + TH+
Sbjct: 583 LALSMRVPCSHNPSGISHYLIIRNEQGFRL--KLSATKKPFPTLQMMLTHH 631
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +3
Query: 396 PATAVTMLHPSNPVPPILLPGDKPAQTN-TYIPSNPPPANHRYTIIPDRHPTSTTIPVRP 572
P T VT+ + P++ A T+ T +P++PP P T TT PV P
Sbjct: 597 PPTTVTVAATTTSKAPVVTTSPTLAPTSPTKLPTSPPSTVGTSPTAPANLTTPTTAPVNP 656
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +3
Query: 396 PATAVTMLHPSNPVPPILLPGDKPAQTN-TYIPSNPPPANHRYTIIPDRHPTSTTIPVRP 572
P T VT+ + P++ A T+ T +P++PP P T TT PV P
Sbjct: 653 PPTTVTVAATTTSKAPVVTTSPTLAPTSPTKLPTSPPSTVGTSPTAPANLTTPTTAPVNP 712
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +3
Query: 297 IQNNPNEARNMLLQNPQLAYALLQAQVIMRIVDPATAVTMLHPSNPVPPILLPGDKPAQT 476
++ P++ N Q P+ ++ + A P++ V PS P P + G+ PAQ
Sbjct: 525 VEKTPDQTDN---QVPETSHEMAPAPAPQP--SPSSPVYGPTPSEPAKPSMPSGESPAQP 579
Query: 477 NTYIPS-NPPPA 509
IP+ NP P+
Sbjct: 580 EPSIPAVNPEPS 591
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/50 (38%), Positives = 21/50 (42%)
Frame = +3
Query: 423 PSNPVPPILLPGDKPAQTNTYIPSNPPPANHRYTIIPDRHPTSTTIPVRP 572
P P P LPG A PS PP H + P R P T +P RP
Sbjct: 70 PPGPQGPSDLPGPSGAPPGPPHPSGPPHRPHPH---PSRRPRPTRLP-RP 115
>AL110485-29|CAB60376.3| 732|Caenorhabditis elegans Hypothetical
protein Y46G5A.10 protein.
Length = 732
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +3
Query: 375 VIMRIVDPATAVTMLHPSNPVPPILLPGDKPAQTNTYIPSNPPPANHRYTIIPDRHPTST 554
+++ + P+ + T+L S P + + P + + IPS+ P +T R PT T
Sbjct: 297 IVVTKLRPSRSDTILSRSVSTSPSSVTDNIPKTSTSRIPSSENPKTMEHTTTSRRFPTQT 356
Query: 555 TI 560
+I
Sbjct: 357 SI 358
>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical protein
T12D8.1 protein.
Length = 2561
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +3
Query: 420 HPSNPVPP-ILLPGDKPAQTNTYIPSNPPP 506
HP P P +++PG P IP PPP
Sbjct: 1422 HPGGPGGPRLIMPGQFPQLQGRRIPQQPPP 1451
>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical protein
T12D8.1 protein.
Length = 2561
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +3
Query: 420 HPSNPVPP-ILLPGDKPAQTNTYIPSNPPP 506
HP P P +++PG P IP PPP
Sbjct: 1422 HPGGPGGPRLIMPGQFPQLQGRRIPQQPPP 1451
>Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical
protein C25A1.4 protein.
Length = 454
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 10 GKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSL 111
GKPKG E++ +E A + NL ++ GR++
Sbjct: 83 GKPKGNAVVEFETREGAEKCVENLQKFDWKGRTI 116
>Z79601-3|CAB01883.2| 640|Caenorhabditis elegans Hypothetical
protein K09A9.1 protein.
Length = 640
Score = 28.7 bits (61), Expect = 3.9
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Frame = +3
Query: 246 DIAPEQMFELMKQMKLCIQNNPNEARNMLLQ--NPQLAYALLQAQVIM-RIVDPATAVTM 416
++A + +QMK I+ P E + +++Q Q+ + +V + A +
Sbjct: 510 EMAKRDFRSIQEQMKRRIETKPTEYQTLVMQVRLQQINQLFFEKEVSQAQKQHRAPRLVQ 569
Query: 417 LHPSNPVPPILLPGDKPAQTNTYIPSNPPPANHRYTIIPD 536
L S+ +LLPGD + Y PS P Y ++ D
Sbjct: 570 LKCSDISKELLLPGDIYPISEHYHPSQQPVDKVVYKLLSD 609
>U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical protein
R07G3.3a protein.
Length = 1982
Score = 28.7 bits (61), Expect = 3.9
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Frame = +3
Query: 366 QAQVIMRIVDPATAVT-----MLHP-SNPVPPILLPGDK----PAQTNTYIPSNPPPANH 515
QAQ ++ PA A T + P P+PP + P + P + IP PP N
Sbjct: 1492 QAQSSSNVIPPAPAPTPTSQQKVSPVKRPIPPSI-PNEPLDIIPPVPSDNIPDPTPPTNS 1550
Query: 516 RYTIIPDRHPTSTTIPV 566
T++P H T++ V
Sbjct: 1551 FGTVLPVPHTFQTSVRV 1567
>U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical protein
R07G3.3b protein.
Length = 1987
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +3
Query: 423 PSNPVPPILLPGDKPAQTNTYIPSNPPPANHRYTIIPDRHPTSTTIPV 566
PS P P+ + P+ +P PP N T++P H T++ V
Sbjct: 1523 PSIPNEPLDIIPPVPSDNIPVVPDPTPPTNSFGTVLPVPHTFQTSVRV 1570
>AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical
protein F49F1.8 protein.
Length = 615
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 465 PAQTNTYIPSNPPPANHRYTIIPDRHPTSTTIPVRPWMLI 584
P++T +P P + +P HPTS + PW LI
Sbjct: 511 PSETQKKRKEDPRPISSAPESVPPTHPTSHSEIEHPWKLI 550
>AC024777-5|AAF60564.1| 506|Caenorhabditis elegans Hypothetical
protein Y42H9AR.1 protein.
Length = 506
Score = 28.7 bits (61), Expect = 3.9
Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Frame = +3
Query: 339 NPQLAYALLQAQVIMRIVDPATAVTMLHPSNPVPPILLPGDKPAQT-NTYIPSNPPPANH 515
NP +Y Q V PA A T + S P P P Q ++Y+PS PP
Sbjct: 379 NPPTSYQAYQPPVPTSYYPPA-ASTASNSSGYQAPYYSPPSYPTQQQSSYVPSAVPPM-F 436
Query: 516 RYTIIPDRHPTSTTIPVRP 572
T P PTS P+ P
Sbjct: 437 SATSAP-TPPTSYVNPIPP 454
>U53338-2|AAA96190.2| 558|Caenorhabditis elegans Ammonium
transporter homolog protein4 protein.
Length = 558
Score = 28.3 bits (60), Expect = 5.2
Identities = 7/17 (41%), Positives = 14/17 (82%)
Frame = -2
Query: 530 DYCVSVVGWWWIGWYIS 480
D C+++VG+W +GW ++
Sbjct: 51 DSCIAIVGYWALGWALA 67
>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
protein W05F2.7 protein.
Length = 1424
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -3
Query: 445 IGGT-GLLG*SIVTAVAGSTILIMTCACSSAYASCG 341
IGGT G G ++ T VAGST++ + A+ S G
Sbjct: 606 IGGTMGSTGMTLTTLVAGSTVVTPMTEATGAFLSAG 641
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
++TGK KG+ F +K Q++++S ++ ++ R LR+
Sbjct: 282 KDTGKGKGFAFVNFK-QDSSVSLALSMETIKMEKRDLRI 319
>U53338-3|AAA96191.1| 534|Caenorhabditis elegans Ammonium
transporter homolog protein1 protein.
Length = 534
Score = 27.9 bits (59), Expect = 6.9
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = -2
Query: 530 DYCVSVVGWWWIGWYIS 480
D C+ ++G+W IGW ++
Sbjct: 71 DSCICIIGYWAIGWALA 87
>U46673-7|AAC48154.1| 811|Caenorhabditis elegans
Beta-catenin/armadillo relatedprotein 1 protein.
Length = 811
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +3
Query: 390 VDPATAVTMLHPSNPVPPILLPGDKPAQTNTYIPSNPPPANHRYTIIPDRH 542
+DP A +P P PP D+ +PSNP P++H P R+
Sbjct: 760 LDPH-ATASCYP-RPTPPQYNSYDRSPPVYNDLPSNPGPSSHSSDYYPSRN 808
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 19 KGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
KG+GF + ++ A A+ +G + GR LRV
Sbjct: 60 KGFGFVRFYERRDAEHALDRTDGKLVDGRELRV 92
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 19 KGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
KG+GF + ++ A A+ +G + GR LRV
Sbjct: 60 KGFGFVRFYERRDAEHALDRTDGKLVDGRELRV 92
>AF063646-1|AAC17424.1| 811|Caenorhabditis elegans
beta-catenin/armadillo homologBAR-1 protein.
Length = 811
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +3
Query: 390 VDPATAVTMLHPSNPVPPILLPGDKPAQTNTYIPSNPPPANHRYTIIPDRH 542
+DP A +P P PP D+ +PSNP P++H P R+
Sbjct: 760 LDPH-ATASCYP-RPTPPQYNSYDRSPPVYNDLPSNPGPSSHSSDYYPSRN 808
>AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen protein
70 protein.
Length = 530
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/52 (30%), Positives = 21/52 (40%)
Frame = +3
Query: 378 IMRIVDPATAVTMLHPSNPVPPILLPGDKPAQTNTYIPSNPPPANHRYTIIP 533
I+ + P+ +VT PP P T Y P PPA YT+ P
Sbjct: 209 IVTVTPPSPSVTPGGRPGSTPPATFPPGS-VSTVRYTPGPTPPAPWTYTVPP 259
>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
mutant phenotypeprotein 1 protein.
Length = 4177
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +3
Query: 312 NEARNMLLQNPQLA--YALLQAQVIMRIVDPATAVTMLHPSNPVPPILLPGDKPAQTNTY 485
NE + +N Q +++L + I+D + +P N +P IL G KP T
Sbjct: 3280 NERAIRISENAQKISIHSMLAIPMCKNILDLLANIARAYPGNFLPLILRHGAKPTDTPKQ 3339
Query: 486 IPS 494
PS
Sbjct: 3340 APS 3342
>AC006708-23|AAF60414.1| 975|Caenorhabditis elegans Paz/piwi
domain-containing protein2 protein.
Length = 975
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 396 PATAVTMLHPSNPVPPILLP 455
P TA LHP PVPP+ +P
Sbjct: 21 PVTAPPGLHPPPPVPPVPVP 40
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +1
Query: 4 ETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRME 150
++G KG+ F + E + +A+ +NG + R++ V A S+ E
Sbjct: 137 DSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGE 185
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +1
Query: 4 ETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRME 150
++G KG+ F + E + +A+ +NG + R++ V A S+ E
Sbjct: 147 DSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGE 195
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,521,675
Number of Sequences: 27780
Number of extensions: 330704
Number of successful extensions: 1410
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 1276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1405
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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