Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0893
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.0  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   3.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   3.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   3.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   4.6  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +3

Query: 489 PSNPPPANHRYTIIPDRHPTSTTIPVRPWMLI 584
           P   PP+++  + +P   P    IPVR  +++
Sbjct: 433 PILTPPSSNPVSPVPSPDPLDLAIPVRETLIL 464


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +3

Query: 420 HPSNPVPPILLPGDKPAQTNTYIPSNPPPANHRYTIIPDRHPTSTT 557
           +PS   PP   PG  P+Q  + +  +P    H+   +  +H  S T
Sbjct: 41  NPSQGPPPGGPPGAPPSQNPSQMMISPASGIHQMQQLLQQHILSPT 86


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -1

Query: 237 FTDCFRCFFRFYWI 196
           F  CF CF   YWI
Sbjct: 412 FPVCFVCFNLMYWI 425


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -1

Query: 237 FTDCFRCFFRFYWI 196
           F  CF CF   YWI
Sbjct: 412 FPVCFVCFNLMYWI 425


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 12/47 (25%), Positives = 18/47 (38%)
 Frame = +3

Query: 393 DPATAVTMLHPSNPVPPILLPGDKPAQTNTYIPSNPPPANHRYTIIP 533
           D     T  + S P PP+    D   +T   +P  PP    +   +P
Sbjct: 606 DVCVLKTDTNQSCPSPPVTTKRDGTQETEERLPPLPPKRIRKMPSMP 652


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -1

Query: 237 FTDCFRCFFRFYWI 196
           F  CF CF   YWI
Sbjct: 350 FPVCFVCFNLMYWI 363


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 454 GSKIGGTGLLG*SIVTAVAGSTILIMTCA 368
           G    G G++G +I + VAG+  L +  A
Sbjct: 7   GGSSAGVGVVGGTIASVVAGAASLTLVKA 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,502
Number of Sequences: 438
Number of extensions: 4170
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)