Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0893
(669 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 81 9e-16
At1g73840.1 68414.m08549 hydroxyproline-rich glycoprotein family... 52 5e-07
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 46 2e-05
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 46 2e-05
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 46 3e-05
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 46 3e-05
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 45 4e-05
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 45 4e-05
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 44 9e-05
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 44 9e-05
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 44 9e-05
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 43 2e-04
At5g51300.2 68418.m06360 splicing factor-related contains simila... 43 2e-04
At5g51300.1 68418.m06359 splicing factor-related contains simila... 43 2e-04
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 42 3e-04
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 42 3e-04
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 42 3e-04
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 42 3e-04
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 42 3e-04
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 42 3e-04
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 42 5e-04
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 42 5e-04
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 42 5e-04
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 42 5e-04
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 41 6e-04
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 41 6e-04
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 41 6e-04
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 41 6e-04
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 41 9e-04
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 41 9e-04
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 40 0.001
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 40 0.001
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 40 0.001
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 39 0.003
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 39 0.003
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 39 0.003
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 39 0.003
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 39 0.003
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 38 0.005
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 38 0.005
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 38 0.006
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 38 0.008
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 38 0.008
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 38 0.008
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 37 0.011
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 37 0.014
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 37 0.014
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 37 0.014
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 37 0.014
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 36 0.018
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 36 0.018
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 36 0.018
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 36 0.018
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 36 0.018
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 36 0.018
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 36 0.024
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 36 0.024
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 36 0.024
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 36 0.024
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 36 0.024
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 36 0.032
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 36 0.032
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 36 0.032
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 35 0.043
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 35 0.043
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 35 0.043
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 35 0.043
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 35 0.043
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 35 0.056
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 35 0.056
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 35 0.056
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 35 0.056
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 35 0.056
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 35 0.056
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 34 0.074
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 34 0.074
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 34 0.074
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 34 0.098
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 33 0.13
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 33 0.13
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 33 0.13
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 33 0.17
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 33 0.17
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 33 0.23
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 33 0.23
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 33 0.23
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 33 0.23
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 33 0.23
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 32 0.30
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 32 0.30
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 32 0.30
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 32 0.40
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 32 0.40
At3g22070.1 68416.m02785 proline-rich family protein contains pr... 32 0.40
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 32 0.40
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 32 0.40
At5g14920.1 68418.m01750 gibberellin-regulated family protein si... 31 0.52
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 31 0.52
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 31 0.69
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 31 0.69
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 31 0.69
At3g24550.1 68416.m03083 protein kinase family protein contains ... 31 0.69
At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid t... 31 0.69
At5g60660.1 68418.m07613 major intrinsic family protein / MIP fa... 31 0.92
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 31 0.92
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 31 0.92
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 31 0.92
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t... 31 0.92
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 31 0.92
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 31 0.92
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 31 0.92
At5g08230.1 68418.m00965 PWWP domain-containing protein putative... 30 1.2
At1g23040.1 68414.m02878 hydroxyproline-rich glycoprotein family... 30 1.2
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 30 1.6
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 30 1.6
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 29 2.1
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 29 2.1
At4g16280.1 68417.m02469 flowering time control protein / FCA ga... 29 2.1
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 29 2.1
At3g42880.1 68416.m04495 leucine-rich repeat transmembrane prote... 29 2.1
At1g23540.1 68414.m02960 protein kinase family protein contains ... 29 2.1
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro... 29 2.8
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 29 2.8
At2g04680.1 68415.m00478 DC1 domain-containing protein contains ... 29 2.8
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 29 2.8
At1g51580.1 68414.m05806 KH domain-containing protein 29 2.8
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 29 3.7
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 29 3.7
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 29 3.7
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 29 3.7
At1g50300.1 68414.m05639 zinc finger (Ran-binding) family protei... 29 3.7
At1g26150.1 68414.m03192 protein kinase family protein similar t... 29 3.7
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 28 4.9
At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family... 28 4.9
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 28 4.9
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 28 4.9
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 28 4.9
At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica... 28 4.9
At1g31310.1 68414.m03831 hydroxyproline-rich glycoprotein family... 28 4.9
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 28 6.5
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 28 6.5
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 28 6.5
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 28 6.5
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 28 6.5
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 28 6.5
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 28 6.5
At3g32400.1 68416.m04142 formin homology 2 domain-containing pro... 28 6.5
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 28 6.5
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 28 6.5
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro... 28 6.5
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 28 6.5
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 28 6.5
At1g11130.1 68414.m01274 leucine-rich repeat family protein / pr... 28 6.5
At5g56890.1 68418.m07099 protein kinase family protein contains ... 27 8.5
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 27 8.5
At5g10570.1 68418.m01223 basic helix-loop-helix (bHLH) family pr... 27 8.5
At3g53330.1 68416.m05884 plastocyanin-like domain-containing pro... 27 8.5
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 27 8.5
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 27 8.5
At2g25930.1 68415.m03112 hydroxyproline-rich glycoprotein family... 27 8.5
At2g23770.1 68415.m02839 protein kinase family protein / peptido... 27 8.5
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 27 8.5
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica... 27 8.5
At1g23720.1 68414.m02994 proline-rich extensin-like family prote... 27 8.5
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 80.6 bits (190), Expect = 9e-16
Identities = 38/57 (66%), Positives = 42/57 (73%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQG 171
RETGKPKGYGFCEYKD+ETALSA RNL YEI GR LRVD A +K + + QG
Sbjct: 44 RETGKPKGYGFCEYKDEETALSARRNLQSYEINGRQLRVDFAENDKGTDKTRDQSQG 100
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +3
Query: 261 QMFELMKQMKLCIQNNPNEARNMLLQNPQLAYALLQAQVIMRIVDP 398
Q+ E++ +KL N AR +L+ PQL A+ AQV++ IV P
Sbjct: 178 QLTEIISSIKLMATQNKEHARQLLVSRPQLLKAVFLAQVMLGIVSP 223
>At1g73840.1 68414.m08549 hydroxyproline-rich glycoprotein family
protein similar to proline-rich protein precursor
GB:AAC34889 [Glycine max]
Length = 388
Score = 51.6 bits (118), Expect = 5e-07
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
Frame = +3
Query: 261 QMFELMKQMKLCIQNNPNEARNMLLQNPQLAYALLQAQVIMRIVDPATAVTMLHPSNPVP 440
Q++++M QMK I N +AR +L++NP L AL QAQ+++ +V P + P
Sbjct: 23 QLYDIMSQMKTLIDQNHQQAREILIRNPLLTKALFQAQIMLGMVQPPQVTPKVEPQAVQQ 82
Query: 441 PILLPGDKPAQTNTYI--------PSNPPPANHRYTIIPDR-HPTSTTIPVRP 572
P P + N S PAN P R HPT +P+ P
Sbjct: 83 PQQSHQSIPPKPNVQAHMSSFQGGGSVHEPANTMQPQAPIRKHPTPQPMPMPP 135
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/47 (40%), Positives = 34/47 (72%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKS 141
RETG+ +G+GF + +++A +A++ ++G E+ GR +RV N TE+S
Sbjct: 70 RETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRV-NLATERS 115
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/47 (40%), Positives = 34/47 (72%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKS 141
RETG+ +G+GF + +++A +A++ ++G E+ GR +RV N TE+S
Sbjct: 70 RETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRV-NLATERS 115
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 45.6 bits (103), Expect = 3e-05
Identities = 17/42 (40%), Positives = 29/42 (69%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
RETG+ +G+GF +KD++ A+ +NG ++ GRS+ V+ A
Sbjct: 43 RETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEA 84
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 45.6 bits (103), Expect = 3e-05
Identities = 17/42 (40%), Positives = 29/42 (69%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
RETG+ +G+GF +KD++ A+ +NG ++ GRS+ V+ A
Sbjct: 43 RETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEA 84
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 45.2 bits (102), Expect = 4e-05
Identities = 24/81 (29%), Positives = 35/81 (43%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQV 180
R TG+ KGYGF + D+ + AM +NG R +R A +K A Q Q
Sbjct: 209 RTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQG 268
Query: 181 ENPYGDPVEPEKAPEAISKAV 243
+ DP A+ ++V
Sbjct: 269 NSGESDPTNTTIFVGAVDQSV 289
Score = 30.7 bits (66), Expect = 0.92
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +1
Query: 19 KGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
K GF +Y ++ A A+ LNG ++GG+S+R+
Sbjct: 313 KRCGFVQYANRACAEQALSVLNGTQLGGQSIRL 345
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 45.2 bits (102), Expect = 4e-05
Identities = 20/48 (41%), Positives = 30/48 (62%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRME 150
TGK KG+ F Y+DQ + + A+ NLNG + GR+++VD+ K E
Sbjct: 73 TGKSKGFAFLAYEDQRSTILAVDNLNGALVLGRTIKVDHCGAYKKHEE 120
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 44.0 bits (99), Expect = 9e-05
Identities = 17/42 (40%), Positives = 29/42 (69%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
RETG+ +G+GF + D+ A +A+ ++G E+ GR +RV+ A
Sbjct: 70 RETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 44.0 bits (99), Expect = 9e-05
Identities = 17/42 (40%), Positives = 29/42 (69%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
RETG+ +G+GF + D+ A +A+ ++G E+ GR +RV+ A
Sbjct: 70 RETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 44.0 bits (99), Expect = 9e-05
Identities = 18/48 (37%), Positives = 31/48 (64%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSR 144
R TG+ +G+GF ++ E SA+ +NG E+ GR+LR+ N +E+ +
Sbjct: 254 RNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRL-NLASEREK 300
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVD 120
T + +G+GF E A AM+ N +IGGR+++V+
Sbjct: 153 TDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVN 190
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQV 180
R TG+ KGYGF + D+ + AM +NG R +R+ A + + A+ Q Q
Sbjct: 190 RTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQG 249
Query: 181 EN 186
N
Sbjct: 250 AN 251
Score = 31.9 bits (69), Expect = 0.40
Identities = 20/65 (30%), Positives = 35/65 (53%)
Frame = +1
Query: 19 KGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQVENPYGD 198
K GF +Y ++ +A A+ LNG ++GG+S+R+ + + + QA G YG
Sbjct: 295 KRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSPNKQSD-QAQWNG---GGYYGY 350
Query: 199 PVEPE 213
P +P+
Sbjct: 351 PPQPQ 355
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/39 (48%), Positives = 26/39 (66%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
R TG KGYGF +Y D + A +A++ +NGY GR+L V
Sbjct: 515 RVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAV 553
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/39 (48%), Positives = 26/39 (66%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
R TG KGYGF +Y D + A +A++ +NGY GR+L V
Sbjct: 515 RVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAV 553
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/64 (32%), Positives = 34/64 (53%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQVEN 186
TG+P+G+GF +Y+ E A AM+ +N IGGR + + E++R Q +
Sbjct: 84 TGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGREIAI--VFAEENRKTPQEMRTTNGTSG 141
Query: 187 PYGD 198
+GD
Sbjct: 142 RHGD 145
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/42 (38%), Positives = 28/42 (66%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
RE+G+ +G+GF +KD++ A+ +NG E+ GR + V+ A
Sbjct: 41 RESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEA 82
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/42 (38%), Positives = 28/42 (66%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
RE+G+ +G+GF +KD++ A+ +NG E+ GR + V+ A
Sbjct: 41 RESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEA 82
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/42 (38%), Positives = 28/42 (66%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
RE+G+ +G+GF +KD++ A+ +NG E+ GR + V+ A
Sbjct: 41 RESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEA 82
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/57 (29%), Positives = 36/57 (63%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQG 171
R+TG+P+G+GF + D+ A A+++++G E+G + + V+ A + ++ L +G
Sbjct: 47 RDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKG 103
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/57 (29%), Positives = 36/57 (63%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQG 171
R+TG+P+G+GF + D+ A A+++++G E+G + + V+ A + ++ L +G
Sbjct: 47 RDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKG 103
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSR--MEMQALMQGPQV 180
TG+ KGYGF + D+ AM +NG + R++R+ A K+ + M +
Sbjct: 235 TGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTL 294
Query: 181 ENPYGD 198
P GD
Sbjct: 295 TRPEGD 300
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNG 87
+ G +GYGF E++ + A +R NG
Sbjct: 138 KNNGLSEGYGFVEFESHDVADKVLREFNG 166
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSR--MEMQALMQGPQV 180
TG+ KGYGF + D+ AM +NG + R++R+ A K+ + M +
Sbjct: 235 TGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTL 294
Query: 181 ENPYGD 198
P GD
Sbjct: 295 TRPEGD 300
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNG 87
+ G +GYGF E++ + A +R NG
Sbjct: 138 KNNGLSEGYGFVEFESHDVADKVLREFNG 166
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEK 138
R TG+ KGYGF + D+ + AM +NG R +R+ A ++K
Sbjct: 191 RVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKK 236
Score = 31.1 bits (67), Expect = 0.69
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +1
Query: 19 KGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
K GF ++ ++ A A+R LNG ++GG ++R+
Sbjct: 296 KRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRL 328
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEK 138
R TG+ KGYGF + D+ + AM +NG R +R+ A ++K
Sbjct: 191 RVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKK 236
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 41.1 bits (92), Expect = 6e-04
Identities = 23/62 (37%), Positives = 31/62 (50%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQV 180
RETG KGY FC Y+D A LNG ++G ++L V R ++Q P+
Sbjct: 394 RETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV-------RRANQGTMLQKPEQ 446
Query: 181 EN 186
EN
Sbjct: 447 EN 448
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 41.1 bits (92), Expect = 6e-04
Identities = 23/62 (37%), Positives = 31/62 (50%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQV 180
RETG KGY FC Y+D A LNG ++G ++L V R ++Q P+
Sbjct: 394 RETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV-------RRANQGTMLQKPEQ 446
Query: 181 EN 186
EN
Sbjct: 447 EN 448
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 41.1 bits (92), Expect = 6e-04
Identities = 23/62 (37%), Positives = 31/62 (50%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQV 180
RETG KGY FC Y+D A LNG ++G ++L V R ++Q P+
Sbjct: 394 RETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV-------RRANQGTMLQKPEQ 446
Query: 181 EN 186
EN
Sbjct: 447 EN 448
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 41.1 bits (92), Expect = 6e-04
Identities = 19/42 (45%), Positives = 24/42 (57%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
RETG KGY FC Y+D A LNG ++G ++L V A
Sbjct: 410 RETGNSKGYAFCVYQDPSVTDIACAALNGIKMGDKTLTVRRA 451
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 40.7 bits (91), Expect = 9e-04
Identities = 15/37 (40%), Positives = 27/37 (72%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSL 111
RETG+ KG+ F +KD+++ +A+ +NG E+ GR++
Sbjct: 79 RETGRSKGFRFVTFKDEDSMRTAIDRMNGQELDGRNI 115
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 40.7 bits (91), Expect = 9e-04
Identities = 17/45 (37%), Positives = 31/45 (68%)
Frame = +1
Query: 4 ETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEK 138
+TG+ +GYGF Y + +A+ +L+G+E+ GR++RV+ A +K
Sbjct: 213 DTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGKK 257
Score = 32.3 bits (70), Expect = 0.30
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRME 150
R+TG+ +G+ F + E + NL+G E GR+L+V+ A K E
Sbjct: 120 RDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKE 169
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/42 (40%), Positives = 29/42 (69%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
RETG+ +G+GF + E A SA++ L+G ++ GR ++V+ A
Sbjct: 75 RETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYA 116
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQ 156
R+T + +G+GF E A A+ N +E+ GR L V+ A SR E Q
Sbjct: 148 RDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQ 199
Score = 36.7 bits (81), Expect = 0.014
Identities = 16/48 (33%), Positives = 30/48 (62%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSR 144
RETG+ +G+GF + ++ A+ L+G + GR+++V N E++R
Sbjct: 242 RETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKV-NVAEERTR 288
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 39.9 bits (89), Expect = 0.001
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKS 141
TG+ KGYGF + D+ AM +NG + R++R+ A K+
Sbjct: 237 TGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKT 281
Score = 27.5 bits (58), Expect = 8.5
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNG 87
+ G +GYGF E++ + A ++ NG
Sbjct: 140 KHNGSSEGYGFVEFESHDVADKVLQEFNG 168
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNAC 129
+ TG+ KGYGF +K+ E A+ A +N+N I GR + AC
Sbjct: 57 KNTGRSKGYGFVTFKEAEAAMRACQNMNPV-IDGRRANCNLAC 98
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/42 (35%), Positives = 28/42 (66%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
++T +PKG+GF ++ ++ A A++ LNG + GR + V+ A
Sbjct: 101 QQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFVETA 142
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
R++G+ KG+GF + A+ +LNG ++ GR +RV A
Sbjct: 284 RDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEA 325
Score = 35.9 bits (79), Expect = 0.024
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQ 177
TG+ +G+GF +A + NGYE GR LRV NA + E ++ +GP+
Sbjct: 136 TGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRV-NAGPPPPKRE-ESFSRGPR 190
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
R++G+ KG+GF + A+ +LNG ++ GR +RV A
Sbjct: 292 RDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEA 333
Score = 35.9 bits (79), Expect = 0.024
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQ 177
TG+ +G+GF +A + NGYE GR LRV NA + E ++ +GP+
Sbjct: 136 TGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRV-NAGPPPPKRE-ESFSRGPR 190
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/53 (33%), Positives = 32/53 (60%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQA 159
R T + YGF EY+ +E A A++ LN ++ G+ +RV+ A +K +++ A
Sbjct: 60 RVTNLHQNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSLDVGA 112
Score = 31.1 bits (67), Expect = 0.69
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +1
Query: 4 ETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRME 150
+TG +G+GF Y E + +A+ ++ G + R + V A + ++ E
Sbjct: 149 DTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKKDTKGE 197
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRME 150
RET + +G+GF + A +A+ N Y++ GR L V+ A SR E
Sbjct: 185 RETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPE 234
Score = 36.3 bits (80), Expect = 0.018
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
RETG+ +G+GF D + A+ L+G + GR++RV+ A
Sbjct: 279 RETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA-CTEKSRMEMQALMQG 171
TG P+G+GF ++ D A A +++GY + GR L V A K EM+A +G
Sbjct: 73 TGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPTEMRARERG 128
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/43 (37%), Positives = 28/43 (65%)
Frame = +1
Query: 19 KGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRM 147
K YGF + ++ +A A+ +++G IGGR++RV++ T RM
Sbjct: 47 KCYGFVTFSNRRSADDAIEDMDGKSIGGRAVRVNDVTTRGGRM 89
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 37.5 bits (83), Expect = 0.008
Identities = 16/53 (30%), Positives = 31/53 (58%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQA 159
+ TGK KGYGF + + +A++ +NG +G R +++ + + K R + +A
Sbjct: 172 KRTGKTKGYGFVSFLNPADLAAALKEMNGKYVGNRPIKLRKS-SWKERTDQEA 223
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 37.5 bits (83), Expect = 0.008
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +1
Query: 4 ETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVD 120
ETG PKG+ F ++ ++ A +A++ NG+ G R + VD
Sbjct: 367 ETGLPKGFAFVKFTCKKDAANAIKKFNGHMFGKRPIAVD 405
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 37.5 bits (83), Expect = 0.008
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Frame = +1
Query: 10 GKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRM-EMQAL---MQGPQ 177
G +G+GF Y + E AL AM+ +NG IG + L V A ++ R +Q+L ++ P
Sbjct: 365 GLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHLQSLFTQIRSPG 424
Query: 178 VENPYGDPV 204
+P P+
Sbjct: 425 TMSPVPSPM 433
Score = 35.9 bits (79), Expect = 0.024
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +1
Query: 10 GKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQA 159
G+ KGYGF +++ +ETA +A+ LNG + + + V + + R ++
Sbjct: 169 GRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSES 218
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +1
Query: 4 ETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRME 150
++G + +GF + E A A+ +NG +G L V A + R E
Sbjct: 260 QSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREE 308
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 37.1 bits (82), Expect = 0.011
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +1
Query: 10 GKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA-CTEKSRMEMQALMQGPQVEN 186
G +G+GF Y + E AL A+ +NG IG + L + A E R +QAL +
Sbjct: 369 GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQIRAPG 428
Query: 187 PYGDPVEPEKAP 222
P P P
Sbjct: 429 PMSGFHHPPGGP 440
Score = 35.5 bits (78), Expect = 0.032
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSR 144
TG+ KGYGF +++ +E+A +A+ LNG + + + V + + R
Sbjct: 172 TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQER 217
Score = 31.5 bits (68), Expect = 0.52
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 4 ETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRME 150
++G + +GF ++ E A SA+ +NG +G L V A + R E
Sbjct: 264 QSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREE 312
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 36.7 bits (81), Expect = 0.014
Identities = 15/40 (37%), Positives = 27/40 (67%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
TG+ +GYGF + +++A SA+ +NG E+ G ++ V+ A
Sbjct: 68 TGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVA 107
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 36.7 bits (81), Expect = 0.014
Identities = 19/61 (31%), Positives = 37/61 (60%)
Frame = +1
Query: 4 ETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQVE 183
ET +PKG+GF + ++ A A+++L+G + GR + V+ A K+ E++A + + E
Sbjct: 43 ETQRPKGFGFITFDSEDDARKALKSLDGKIVDGRLIFVEVA---KNAEEVRAGINSNKAE 99
Query: 184 N 186
+
Sbjct: 100 D 100
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 36.7 bits (81), Expect = 0.014
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
TG P+G+GF ++ D A A ++GY + GR L V
Sbjct: 74 TGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTV 110
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 36.7 bits (81), Expect = 0.014
Identities = 22/72 (30%), Positives = 33/72 (45%)
Frame = +1
Query: 10 GKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQVENP 189
G+ GYGF + +E A +A+ LNG EI GR + + + S E ++
Sbjct: 233 GRSSGYGFVSFATREEAENAITKLNGKEIMGRPITLKFSLRSASESEDGDSVEANNASED 292
Query: 190 YGDPVEPEKAPE 225
GD VE + E
Sbjct: 293 -GDTVEDKNTSE 303
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 36.3 bits (80), Expect = 0.018
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQ 156
TG+ KGYGF ++ ++ AM +NG R +R+ +A T K + +Q
Sbjct: 154 TGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRI-SAATPKKNVGVQ 202
Score = 32.3 bits (70), Expect = 0.30
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSL 111
TG+P+GYGF E+ A ++ NG ++ G L
Sbjct: 61 TGQPEGYGFIEFISHAAAERTLQTYNGTQMPGTEL 95
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 36.3 bits (80), Expect = 0.018
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = +1
Query: 13 KPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSR 144
+ KGY F EY +E A +A++ +NG I G + VD A T+ R
Sbjct: 321 RSKGYAFLEYTTEEAAGTALKEMNGKIINGWMIVVDVAKTKPFR 364
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 36.3 bits (80), Expect = 0.018
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVD 120
TG+ +G+GF +A + NGYE+ GR LRV+
Sbjct: 128 TGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVN 165
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 36.3 bits (80), Expect = 0.018
Identities = 21/49 (42%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Frame = +1
Query: 4 ETGKPKGYGFCEYKDQETALSAMRNLNG-YEIGGRSLRVDNACTEKSRM 147
ETG KG+GF ++ E A +A+ NLNG EI GR+++V +A T+++ +
Sbjct: 320 ETGLCKGFGFVQFARLEDARNAL-NLNGQLEIAGRAIKV-SAVTDQTEV 366
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 36.3 bits (80), Expect = 0.018
Identities = 12/38 (31%), Positives = 26/38 (68%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLR 114
++TG+ +G+GF +++Q+ A +A+ +NG + R +R
Sbjct: 187 QKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIR 224
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 25 YGFCEYKDQETALSAMRNLNGYEIGGRSLRVD 120
YGF Y D+ A A+ LNG I G+ ++V+
Sbjct: 102 YGFVHYFDRRCASMAIMTLNGRHIFGQPMKVN 133
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 36.3 bits (80), Expect = 0.018
Identities = 12/38 (31%), Positives = 26/38 (68%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLR 114
++TG+ +G+GF +++Q+ A +A+ +NG + R +R
Sbjct: 183 QKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIR 220
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 25 YGFCEYKDQETALSAMRNLNGYEIGGRSLRVD 120
YGF Y D+ A A+ LNG I G+ ++V+
Sbjct: 102 YGFVHYFDRRCASMAIMTLNGRHIFGQPMKVN 133
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 35.9 bits (79), Expect = 0.024
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVD 120
T KPKGY F EY +A + +G +I GR + VD
Sbjct: 175 TNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGRRVLVD 212
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 35.9 bits (79), Expect = 0.024
Identities = 12/38 (31%), Positives = 26/38 (68%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLR 114
++TG+ +G+GF +++Q+ A +A+ +NG + R +R
Sbjct: 179 QKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIR 216
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +1
Query: 25 YGFCEYKDQETALSAMRNLNGYEIGGRSLRVD 120
YGF Y D+ +A A+ +LNG + G+ ++V+
Sbjct: 98 YGFVHYFDRRSAALAILSLNGRHLFGQPIKVN 129
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 35.9 bits (79), Expect = 0.024
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKS 141
TG+ KGYGF + D+ AM +NG R +RV A +++
Sbjct: 251 TGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRA 295
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 35.9 bits (79), Expect = 0.024
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV----DNACTEKSRMEMQALMQ 168
+ TG K +GF Y Q A +A+ +NG ++ G+ L+V DN ++ + L
Sbjct: 374 KATGISKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQLKRDNGQQQQQQQSKNPLFN 433
Query: 169 G 171
G
Sbjct: 434 G 434
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 35.9 bits (79), Expect = 0.024
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV----DNACTEKSRMEMQALMQ 168
+ TG K +GF Y Q A +A+ +NG ++ G+ L+V DN ++ + L
Sbjct: 365 KATGISKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQLKRDNGQQQQQQQSKNPLFN 424
Query: 169 G 171
G
Sbjct: 425 G 425
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 35.5 bits (78), Expect = 0.032
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKS 141
R + + KG+GF + + A A+ NG ++ GR++ VD A ++S
Sbjct: 69 RVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAKQS 115
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 35.5 bits (78), Expect = 0.032
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
R+TG+ +G+GF + D+ ++R ++G + G R + V+ A
Sbjct: 42 RDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRA 83
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 35.5 bits (78), Expect = 0.032
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQ 156
TG+ KGYGF + D+ A+ +NG R +RV A +++ Q
Sbjct: 240 TGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAIANQQ 289
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 35.1 bits (77), Expect = 0.043
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
+ TG K +GF Y Q A +A+ +NG +GG+ L+V
Sbjct: 384 KATGVSKCFGFVSYDSQAAAQNAIDMMNGRHLGGKKLKV 422
Score = 29.9 bits (64), Expect = 1.6
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Frame = +1
Query: 19 KGYGFCEYKDQETALSAMRNLNG-YEIGGRS--LRVDNACTEKSRMEMQALMQGPQVEN- 186
KG F +Y+ +E A+SAM ++NG +++ G + L V A TE+ R + +
Sbjct: 146 KGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLVVKWADTERERHTRRLQKAQSHIARL 205
Query: 187 PYGDPVEP 210
GDP P
Sbjct: 206 GNGDPTNP 213
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 35.1 bits (77), Expect = 0.043
Identities = 12/38 (31%), Positives = 26/38 (68%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLR 114
++TG+ +G+GF +++Q+ A +A+ + G +G R +R
Sbjct: 174 QKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIR 211
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 25 YGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSR 144
YGF Y D+ +A A+ +LNG + G+ ++V+ A R
Sbjct: 93 YGFVHYFDRRSAGLAILSLNGRHLFGQPIKVNWAYASGQR 132
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 35.1 bits (77), Expect = 0.043
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 13 KPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
+P GY F E+ D A A+ +GY+ G LRV+ A
Sbjct: 43 RPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELA 80
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 35.1 bits (77), Expect = 0.043
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 13 KPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
+P GY F E+ D A A+ +GY+ G LRV+ A
Sbjct: 43 RPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELA 80
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 35.1 bits (77), Expect = 0.043
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 13 KPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
+P GY F E+ D A A+ +GY+ G LRV+ A
Sbjct: 43 RPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELA 80
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 34.7 bits (76), Expect = 0.056
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = +1
Query: 4 ETGKPKGYGFCEYKDQETALSAMRNLNG-YEIGGRSLRVDN 123
ETG+ KG+GF ++ E + +A LNG EI GR+++V +
Sbjct: 301 ETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTIKVSS 341
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 34.7 bits (76), Expect = 0.056
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGG 102
RE+G+ +G+GF +KD++ A+ +NG GG
Sbjct: 41 RESGRSRGFGFVTFKDEKAMRDAIEEMNGSGGGG 74
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 34.7 bits (76), Expect = 0.056
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 19 KGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKS 141
+ Y F + E A +A+ +L G+ + G LR++ A EKS
Sbjct: 58 RSYAFVNFNHDEDAFAAIESLQGFPLSGNPLRIEFAKAEKS 98
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 34.7 bits (76), Expect = 0.056
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 13 KPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
+P GY F E++D A A+ +GY+ G LRV+ A
Sbjct: 43 RPPGYAFVEFEDARDADDAIYGRDGYDFDGHHLRVELA 80
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 34.7 bits (76), Expect = 0.056
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 13 KPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
+P GY F E++D A A+ +GY+ G LRV+ A
Sbjct: 43 RPPGYAFVEFEDARDADDAIYGRDGYDFDGHHLRVELA 80
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 34.7 bits (76), Expect = 0.056
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVD-NACTEK 138
T KPKG+GF E++ E L A+R L I G+ L V+ N T++
Sbjct: 240 TKKPKGFGFYEFESAEGILRAIRLLTQRTIDGQELLVNVNQATKE 284
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 34.3 bits (75), Expect = 0.074
Identities = 12/40 (30%), Positives = 26/40 (65%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
+G+ +G+GF + +++ A+ +NG ++ GR++ VD A
Sbjct: 44 SGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKA 83
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 34.3 bits (75), Expect = 0.074
Identities = 26/83 (31%), Positives = 41/83 (49%)
Frame = +1
Query: 4 ETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQVE 183
E G+ KG+GF + + E + A R LNG+ + G+ + V A E+ ++ L Q Q +
Sbjct: 339 ENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVA--ERKEDRIKRLQQYFQAQ 396
Query: 184 NPYGDPVEPEKAPEAISKAVATL 252
P + +AP A S A L
Sbjct: 397 -----PRQYTQAPSAPSPAQPVL 414
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 34.3 bits (75), Expect = 0.074
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVD 120
R +G KGY EY+ +E A SA+ +NG E+ +++ VD
Sbjct: 130 RRSGYVKGYALIEYEKKEEAQSAISAMNGAELLTQNVSVD 169
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 33.9 bits (74), Expect = 0.098
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVD 120
++TG +G+GF + +E A A+ LNGY LRV+
Sbjct: 248 QKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVE 287
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +1
Query: 10 GKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQ 156
GK KG+GF +++ + A A+ +LNG++ + V A +KS E +
Sbjct: 66 GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRA-QKKSERETE 113
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
RE+G +G+GF Y E A +AM+ + E+ GR + V A
Sbjct: 71 RESGLSRGFGFVTYDSIEVANNAMQAMQNKELDGRIIGVHPA 112
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 13 KPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
+P GY F E++D A A+ +GY+ G LRV+ A
Sbjct: 43 RPPGYAFVEFEDPRDADDAIYGRDGYDFDGCRLRVEIA 80
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
+G+ +G+GF ++ ++ ALSA ++G + GR LR+ A
Sbjct: 78 SGRSRGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISFA 117
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +1
Query: 10 GKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRME 150
GK + +GF ++ E A++A+ +NG + + L V A + +R E
Sbjct: 156 GKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTE 202
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVD 120
TG +GYGF EY+ ++ L A + + I GR + VD
Sbjct: 101 TGASRGYGFVEYETEKEMLRAYEDAHHSLIDGREIIVD 138
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVD 120
RET + + F EY D A +A++ LN EIGG+ ++++
Sbjct: 300 RETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLE 339
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVD 120
RET + + F EY D A +A++ LN EIGG+ ++++
Sbjct: 313 RETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLE 352
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
+G+ KGYGF +Y E A A+ LNG + + + V
Sbjct: 169 SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
T + GYG+ Y + A A+ LN + GR++RV
Sbjct: 82 TRRSLGYGYVNYATPQDASRALNELNFMALNGRAIRV 118
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 10 GKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQ 156
GK KG+GF +++ + A A+ LNG + V A +KS E +
Sbjct: 261 GKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKA-QKKSERETE 308
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 4 ETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
+TG+ +G G+ +A A+ +L+G E+GGR +RV
Sbjct: 144 QTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRV 181
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 32.3 bits (70), Expect = 0.30
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRME 150
++T +G+GF + +E A A+ LNGY LRV+ + T K++++
Sbjct: 209 QKTSMSRGFGFVSFVSREDAQRAINKLNGYGYDNLILRVEWS-TPKTQLD 257
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 32.3 bits (70), Expect = 0.30
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNG 87
+ET KPKG+ F EY+ +E A A++ +G
Sbjct: 42 KETDKPKGFAFAEYETEEIADYAVKLFSG 70
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 32.3 bits (70), Expect = 0.30
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 10 GKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
G + +GF Y ++ +AL A+++ YE+ G+ L V
Sbjct: 328 GGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEV 363
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 31.9 bits (69), Expect = 0.40
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLN 84
RET + +GYGF +KD E+A A ++ N
Sbjct: 48 RETDRSQGYGFVTFKDAESATRACKDPN 75
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 31.9 bits (69), Expect = 0.40
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 22 GYGFCEYKDQETALSAMRNLNGYEIGGRSL 111
GYGF E+ ETA S R+L G + G +L
Sbjct: 616 GYGFVEFDSVETATSVYRDLQGTVLDGHAL 645
>At3g22070.1 68416.m02785 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 178
Score = 31.9 bits (69), Expect = 0.40
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 399 ATAVTMLHPSNPVPPILLPGDKPAQTNTYIPS-NPPPANHRYTIIPDRHPTSTTIPVRP 572
+++ T + P NP PI+ P P T P +PPP + T P P ST IP+ P
Sbjct: 91 SSSSTSISP-NPPAPIVNPNPPPPSTPNPPPEFSPPPPDLDTTTAPP--PPSTDIPIPP 146
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 31.9 bits (69), Expect = 0.40
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSR 144
+ TGK KGYGF ++D ++A A+ + N I GR + A + R
Sbjct: 52 KATGKSKGYGFVTFRDSDSATRAVADPNPV-IDGRKANCNIASFGRPR 98
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 31.9 bits (69), Expect = 0.40
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQ 156
+ TG+ KGYGF ++D E A A + I GR + A +SR MQ
Sbjct: 59 KNTGRSKGYGFVTFRDPEAARRACVDPTPI-IDGRRANCNLASLGRSRPPMQ 109
>At5g14920.1 68418.m01750 gibberellin-regulated family protein
similar to SP|P46689 Gibberellin-regulated protein 1
precursor {Arabidopsis thaliana}; contains Pfam profile
PF02704: Gibberellin regulated protein
Length = 275
Score = 31.5 bits (68), Expect = 0.52
Identities = 26/65 (40%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Frame = +3
Query: 396 PATAVTMLHPSNPVPPILLPGDKPAQTNTYIPSNP---PPANHRYTIIPDRHPT---STT 557
P VT + P PPI LP P Q TY P P PP+ T P PT TT
Sbjct: 81 PTIPVTPVKPPVSTPPIKLP---PVQPPTYKPPTPTVKPPSVQPPTYKPPT-PTVKPPTT 136
Query: 558 IPVRP 572
PV+P
Sbjct: 137 SPVKP 141
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Frame = +3
Query: 390 VDPATAVTMLHPSNPV---PPILLPGDKPAQTNTYIPSNPPPANHRYTIIPDRHPT--ST 554
V P T + P+ P PP+ P KP + P+ PP T P + PT
Sbjct: 131 VKPPTTSPVKPPTTPPVQSPPVQPPTYKPPTSPVKPPTTTPPVKPPTTTPPVQPPTYNPP 190
Query: 555 TIPVRP 572
T PV+P
Sbjct: 191 TTPVKP 196
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 31.5 bits (68), Expect = 0.52
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTE 135
R T + E+ D A A++ LNG E+ GR L++ C E
Sbjct: 325 RRTMHENSQVYIEFFDVRKAKVALQGLNGLEVAGRQLKLAPTCPE 369
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 31.1 bits (67), Expect = 0.69
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 10 GKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
G+PKG+ + E+ + E A++ LN E+ GR L+V
Sbjct: 129 GQPKGFAYVEFVEVEAVQEALQ-LNESELHGRQLKV 163
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 31.1 bits (67), Expect = 0.69
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 10 GKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
G+PKG+ + E+ + E A++ LN E+ GR L+V
Sbjct: 126 GQPKGFAYVEFVEVEAVQEALQ-LNESELHGRQLKV 160
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 31.1 bits (67), Expect = 0.69
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 10 GKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
G+PKG+ + E+ + E A++ LN E+ GR L+V
Sbjct: 126 GQPKGFAYVEFVEVEAVQEALQ-LNESELHGRQLKV 160
>At3g24550.1 68416.m03083 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 652
Score = 31.1 bits (67), Expect = 0.69
Identities = 21/59 (35%), Positives = 25/59 (42%)
Frame = +3
Query: 396 PATAVTMLHPSNPVPPILLPGDKPAQTNTYIPSNPPPANHRYTIIPDRHPTSTTIPVRP 572
P+T T PS+P+PP L P P +P P A I P P S T P P
Sbjct: 47 PSTNSTSPPPSSPLPPSLPPPSPPGSLTPPLPQPSPSA----PITPS--PPSPTTPSNP 99
>At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 334
Score = 31.1 bits (67), Expect = 0.69
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 411 TMLHPSNPVPPILLPGDKPAQTNTYIPSNPPPA 509
T HP +P PPI+ P KP + P+ PPP+
Sbjct: 106 TKPHP-HPKPPIVKPPTKPPPSTPKPPTKPPPS 137
>At5g60660.1 68418.m07613 major intrinsic family protein / MIP
family protein similar to mipC protein GI:1657948 from
[Mesembryanthemum crystallinum]
Length = 291
Score = 30.7 bits (66), Expect = 0.92
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = -3
Query: 532 GIIVYRWLAGGGLDGI*VFVWAGLSPGSKIGGTGLLG*SIVTAVA-GSTILIMTCACSSA 356
GI+ W A GG+ + V+ AG+S G I +G + V+ T+L + C A
Sbjct: 79 GILGIAW-AFGGMIFVLVYCTAGIS-GGHINPAVTVGLFLARKVSLVRTVLYIVAQCLGA 136
Query: 355 YASCGFCKSMFRAS 314
CGF K+ F++S
Sbjct: 137 ICGCGFVKA-FQSS 149
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 30.7 bits (66), Expect = 0.92
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
+ +GK KGY E+ D A + LNGY GR V+ A
Sbjct: 269 KASGKSKGYCQVEFYDPVAASACKDALNGYPFNGRPCVVEYA 310
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 30.7 bits (66), Expect = 0.92
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
++TGK K +GF +++D E A A +N Y + L+V
Sbjct: 95 KKTGKSKHFGFIQFEDPEVAEIAAGAMNDYLLMEHMLKV 133
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 30.7 bits (66), Expect = 0.92
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEK 138
+G+ + +GF K E A + + LNG + GR ++V+ TEK
Sbjct: 113 SGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVN--ITEK 154
>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
GB:AAC39463 from [Zea mays], PF00076 RNA recognition
motif (2 copies)
Length = 615
Score = 30.7 bits (66), Expect = 0.92
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVD 120
RET K F E+ D A A +NG EIGG+ + ++
Sbjct: 243 RETPYKKHQRFVEFYDVRDAARAFDRMNGKEIGGKQVVIE 282
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 30.7 bits (66), Expect = 0.92
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +1
Query: 10 GKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
G+ +GYGF ++ +++A +A+ LNG + + + V
Sbjct: 171 GQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFV 206
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA-CTEKSRMEMQA 159
+G KG GF + A + +NG +GG+ L V A E+ R ++QA
Sbjct: 364 SGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKEERRAKLQA 415
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 10 GKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQ 156
GK + +GF +++ E A A+ LNG + + V A +KS E++
Sbjct: 262 GKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKA-QKKSERELE 309
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 30.7 bits (66), Expect = 0.92
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSR 144
+ TGK KGYGF +++ ++A A+ + N I GR + A + R
Sbjct: 52 KNTGKSKGYGFVTFRESDSATRAVADPNPV-IDGRKANCNIASFGRPR 98
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 30.7 bits (66), Expect = 0.92
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSR 144
+ TGK KGYGF +++ ++A A+ + N I GR + A + R
Sbjct: 52 KNTGKSKGYGFVTFRESDSATRAVADPNPV-IDGRKANCNIASFGRPR 98
>At5g08230.1 68418.m00965 PWWP domain-containing protein putative
transcription factor (HUA2) - Arabidopsis thaliana,
EMBL:AF116556
Length = 1445
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = +3
Query: 396 PATAVTMLHPSNPVPPILLPGDKPAQTNTYIPSNPPPANHRYTIIPDRHPTSTTIP 563
PAT PS P LP + P PS+PPP + + P P+ +P
Sbjct: 1110 PATTCATELPSFPAGSPPLPHESPPSPPPQPPSSPPPPSSPPQLAPAPPPSDHCLP 1165
>At1g23040.1 68414.m02878 hydroxyproline-rich glycoprotein family
protein contains proline-rich domains,
INTERPRO:IPR000694
Length = 144
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +3
Query: 423 PSNPVPPILLPGDKPAQTNTYIPSNPPPANHRYTIIP 533
P+ P PP L P P + ++Y P PPPAN Y P
Sbjct: 72 PACPPPPAL-PPPPPKKVSSYCPP-PPPANFLYITGP 106
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 29.9 bits (64), Expect = 1.6
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Frame = +1
Query: 19 KGYGFCEYKDQETALSAMRNLNG-YEIGGRS--LRVDNACTEKSRMEMQALMQGPQVEN- 186
KG F +Y+ +E A+SAM ++NG +++ G + L V A TE+ R + +
Sbjct: 146 KGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLVVKWADTERERHTRRLQKAQSHIARL 205
Query: 187 PYGDPVEP 210
GDP P
Sbjct: 206 GNGDPTNP 213
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTE 135
R +GK KGY E+ D A + +NG+ G++ V A E
Sbjct: 237 RVSGKSKGYCQVEFYDSAAAAACKEGMNGFIFNGKACVVAFASPE 281
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 4 ETGKPKGYGFCEYKDQETALSAMRNLNG 87
E + +G GF +Y +ETA++A+ LNG
Sbjct: 246 EYRQSRGCGFVKYSSKETAMAAIDGLNG 273
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 4 ETGKPKGYGFCEYKDQETALSAMRNLNG 87
E + +G GF +Y +ETA++A+ LNG
Sbjct: 246 EYRQSRGCGFVKYSSKETAMAAIDGLNG 273
>At4g16280.1 68417.m02469 flowering time control protein / FCA
gamma (FCA) identical to SP|O04425 Flowering time
control protein FCA {Arabidopsis thaliana}; four
alternative splice variants, one splicing isoform
contains a non-consensus CA donor splice site, based on
cDNA: gi:2204090
Length = 505
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 4 ETGKPKGYGFCEYKDQETALSAMRNLNG 87
E + +G GF +Y +ETA++A+ LNG
Sbjct: 4 EYRQSRGCGFVKYSSKETAMAAIDGLNG 31
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 25 YGFCEYKDQETALSAMRNLNGYEIGGRSL 111
YGF Y ++ + + A++N YEI G L
Sbjct: 311 YGFVHYAERTSVMRALKNTERYEIDGHML 339
>At3g42880.1 68416.m04495 leucine-rich repeat transmembrane protein
kinase, putative receptor-like protein kinase PRK1,
Lycopersicon esculentum, PIR:T07865
Length = 633
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 258 EQMFELMKQMKLCIQNNPNEARNM 329
+QM EL++ CI +NPNE +NM
Sbjct: 598 KQMVELLRIGAACIASNPNERQNM 621
>At1g23540.1 68414.m02960 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 720
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +3
Query: 396 PATAVTMLHPSNPVPPILLPGDKPAQTNTYIPSNPPPANHRYTIIPDRHPTS 551
PA+ T P++P+ P P +P+ T P+NP + +P + P+S
Sbjct: 159 PASDPTNSPPASPLDPTNPPPIQPSGPATSPPANPNAPPSPFPTVPPKTPSS 210
>At5g58160.1 68418.m07280 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|Q05858 Formin (Limb deformity protein) {Gallus
gallus}; contains Pfam profile PF02181: Formin Homology
2(FH2) Domain
Length = 1307
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Frame = +3
Query: 423 PSNPVPPILLPGDKPAQTNTYIPSNPPPANH-RYTIIPDRHPTSTTIPVRP 572
P+ PPI KPA P PPP H T +P P + P P
Sbjct: 670 PARSPPPISNSDKKPALPRPPPPPPPPPMQHSTVTKVPPPPPPAPPAPPTP 720
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/26 (38%), Positives = 20/26 (76%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRN 78
++TG+ KG+GF +K ++ A +A++N
Sbjct: 198 KDTGRAKGFGFVLFKTRKGARAALKN 223
>At2g04680.1 68415.m00478 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 657
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 394 STILIMTCACSSAYASCGFCKSMF 323
++ ++ T +C+ A ASCG CK F
Sbjct: 440 TSFILFTDSCNKANASCGLCKQHF 463
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSA 69
+ TG+ KGYGF ++D E A A
Sbjct: 59 KNTGRSKGYGFVTFRDPEAARRA 81
>At1g51580.1 68414.m05806 KH domain-containing protein
Length = 621
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +3
Query: 327 MLLQNPQLAYALLQA-QVIMRIVDPATAVTMLHPSNPVPPILLPGDKPAQTN 479
M+++ Q+ Y + + ++I +I + + A+ + ++ +PP PGD Q N
Sbjct: 152 MIVRGNQVDYLMSKGGKMIQKIREDSGAIVRISSTDQIPPCAFPGDVVIQMN 203
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
T +P+G+GF + D E A+ ++ + +++ G+ + V A
Sbjct: 147 TNRPRGFGFVSF-DSEDAVDSVLHKTFHDLSGKQVEVKRA 185
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +1
Query: 31 FCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQA 159
F +Y + + AL A +++NG +GG LRVD ++ + E A
Sbjct: 289 FIDYYEMDDALQA-KSMNGKPMGGSFLRVDFLRSQAPKKEQWA 330
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 19 KGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEM 153
+GY F + + E A A +NG + G + L V A + R ++
Sbjct: 241 RGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQL 285
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
T +P+G+GF Y D E ++ + N +E+ + + V A
Sbjct: 157 TNRPRGFGFVTY-DSEDSVEVVMQSNFHELSDKRVEVKRA 195
>At1g50300.1 68414.m05639 zinc finger (Ran-binding) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|Q27294 RNA-binding protein cabeza {Drosophila
melanogaster}; contains Pfam profiles: PF00076 RNA
recognition motif (aka RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 372
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
+ET +PKG Y+D AL+A+ N + G ++ V
Sbjct: 51 KETDEPKGDATVTYEDPHAALAAVEWFNNKDFHGNTIGV 89
>At1g26150.1 68414.m03192 protein kinase family protein similar to
Pto kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Frame = +3
Query: 396 PATAVTMLHPSN---PVPPILLPGDKPAQTNTYIPSNPPPANHRYTIIPDRHPTSTTIP 563
PA V+ P + P PP P P T+ P+NPPP +P P S +P
Sbjct: 111 PANPVSSPPPESSPPPPPPTEAPPTTPI-TSPSPPTNPPPPPESPPSLPAPDPPSNPLP 168
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
Frame = +3
Query: 456 GDKPAQTNTYIPSNPPPANHRYTIIPDRHPTS--------TTIPVRP 572
G+ P TNT S+PPP + P+ P S TTIPV P
Sbjct: 48 GNPPETTNTPAQSSPPPETPLSSPPPEPSPPSPSLTGPPPTTIPVSP 94
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQA 159
R TG+ +G+G+ + E A +A++ + +G R L V T K M A
Sbjct: 38 RSTGRSRGFGYVTFASAEDAKNALK--GEHFLGNRILEV-KVATPKEEMRQPA 87
>At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family
protein
Length = 421
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Frame = +3
Query: 420 HPSNPVPPILLPGDKPAQTNTYIPSNPPP----ANHRYTIIPDRHPTSTT 557
H NP P P PA ++T S PPP +N R I P P ++
Sbjct: 313 HYQNPEPYYSSPHSAPAPSSTSFSSAPPPPPYSSNGRINIAPVLDPAPSS 362
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSR 144
+ETG+ KGY ++KD + A++ L+ I GR +++ C K R
Sbjct: 296 KETGEFKGYAHVDFKDSVSVAIALK-LDQQVICGRPVKI--CCALKDR 340
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 28.3 bits (60), Expect = 4.9
Identities = 20/68 (29%), Positives = 27/68 (39%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQVEN 186
T + KGYGF +KD + A A + I GR N + R+ M PQ
Sbjct: 54 TRRSKGYGFVTFKDAKAATRACEDSTPI-INGRRANC-NLASLGGRLRKSPTMTSPQQGP 111
Query: 187 PYGDPVEP 210
G+ P
Sbjct: 112 KNGNRATP 119
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 13 KPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
+P Y F E++ A A++ +GY + G LRV+ A
Sbjct: 43 RPPCYCFVEFEHSRDAEDAIKGRDGYNLDGCRLRVELA 80
>At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical
to gi_3883128_gb_AAC77827
Length = 133
Score = 28.3 bits (60), Expect = 4.9
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Frame = +3
Query: 348 LAYALLQAQVIMRIVDPATAVTMLHPSNPVPP----ILLPGDKP-AQTNTYIPSNPPPAN 512
L AL+ + V+ + PA ++ L P+ P P P P A P+ PP +
Sbjct: 10 LFLALVASSVVAQAPGPAPTISPL-PATPTPSQSPRATAPAPSPSANPPPSAPTTAPPVS 68
Query: 513 HRYTIIPDRHPTSTT 557
T P PTST+
Sbjct: 69 QPPTESPPAPPTSTS 83
>At1g31310.1 68414.m03831 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965;
Length = 383
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 414 MLHPSNPVPPILLPGDKPAQTNTYIPSNPPPANHRYTIIPDR 539
+L P P PP P +P +P PPP+ H I+P +
Sbjct: 216 VLLPLQPPPPP--PPSQPLPRPLLLPPPPPPSFHAQPILPTK 255
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +1
Query: 10 GKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
G+PKG+ + E+ + E +++ LN E+ GR ++V
Sbjct: 140 GQPKGFAYVEFVEVEAVQNSL-ILNESELHGRQIKV 174
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
T +P+G+GF Y D E A+ + +E+ G+ + V
Sbjct: 70 TQRPRGFGFISY-DSEEAVDKVLQKTFHELNGKMVEV 105
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
T +P+G+GF Y D E A+ + +E+ G+ + V
Sbjct: 143 TQRPRGFGFISY-DSEEAVDKVLQKTFHELNGKMVEV 178
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 117
T +P+G+GF Y D E A+ + +E+ G+ + V
Sbjct: 143 TQRPRGFGFISY-DSEEAVDKVLQKTFHELNGKMVEV 178
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMR 75
+GK KGYGF YK + A +A++
Sbjct: 177 SGKSKGYGFILYKSRSGARNALK 199
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMR 75
+GK KGYGF YK + A +A++
Sbjct: 177 SGKSKGYGFILYKSRSGARNALK 199
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMR 75
+GK KGYGF YK + A +A++
Sbjct: 177 SGKSKGYGFILYKSRSGARNALK 199
>At3g32400.1 68416.m04142 formin homology 2 domain-containing
protein / FH2 domain-containing protein common family
members: At2g43800, At3g25500, At5g48360, At4g15200,
At3g05470, At3g07540, At5g07780, At5g07650 [Arabidopsis
thaliana];
Length = 488
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +3
Query: 426 SNPVPPILLPGDKPAQTNTYIPSNPPPANH 515
S+P+PP L P A TNT P PPP H
Sbjct: 30 SSPLPPPLPPKKLLATTNT--PPPPPPPLH 57
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +3
Query: 423 PSNPVPPILLPGDKPAQTNTYIPSNPPPANHRYTIIPDRHPTSTTIP 563
P PVPP+ P P+ + P +PPP ++ P S P
Sbjct: 74 PPAPVPPVSPPPPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPPPP 120
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMR 75
++TG+ KGYGF +K ++ A A++
Sbjct: 443 KDTGRGKGYGFVMFKTRKGAREALK 467
>At1g31810.1 68414.m03904 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|P48608 Diaphanous protein {Drosophila
melanogaster}; contains Pfam profile PF02181: Formin
Homology 2(FH2) Domain
Length = 1201
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = +3
Query: 402 TAVTMLHPSNPVPPILLPGDKPA--QTNTYIPSNPPP 506
T+ T PS P PP P P T ++ PS PPP
Sbjct: 494 TSTTSFSPSQPPPP---PPPPPLFMSTTSFSPSQPPP 527
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLR 114
R P+G+G+ E+K + A A ++G +I G+ ++
Sbjct: 133 RAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVK 170
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLR 114
R P+G+G+ E+K + A A ++G +I G+ ++
Sbjct: 133 RAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVK 170
>At1g11130.1 68414.m01274 leucine-rich repeat family protein /
protein kinase family protein contains leucine
rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to leucine-rich
repeat transmembrane protein kinase 2 [Zea mays]
gi|3360291|gb|AAC27895
Length = 768
Score = 27.9 bits (59), Expect = 6.5
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 11/61 (18%)
Frame = +3
Query: 426 SNPVPPILL--PGDK----PAQTNTYIPS-----NPPPANHRYTIIPDRHPTSTTIPVRP 572
S P+PP LL P K P T+ P +PPPA HR +P R P + +P P
Sbjct: 222 SGPIPPNLLKIPNFKKDGTPFNTSIITPPPPPVVDPPPATHRAPPVP-RIPPVSGVPPAP 280
Query: 573 W 575
+
Sbjct: 281 F 281
>At5g56890.1 68418.m07099 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 1113
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Frame = +3
Query: 396 PATAVTMLHPSNPV--PPILLPGDKPAQTNTYIPSNPPPANHRYTIIPDRHPTSTTIPV 566
P + +L P P+ PP +PGD P + PP + R T P P S P+
Sbjct: 115 PVASPPVLQPITPIASPPRFIPGDAPKE---------PPFSGRVTPAPVSSPVSDIPPI 164
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 27.5 bits (58), Expect = 8.5
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 1 RETGKPKGYGFCEYKD 48
R+TG+P+G+GF Y D
Sbjct: 77 RKTGQPRGFGFVTYAD 92
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEK 138
TG+ +G+GF Y+ ++ + N E+ G + + A +K
Sbjct: 167 TGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPKK 210
>At5g10570.1 68418.m01223 basic helix-loop-helix (bHLH) family
protein bHLH transcription factor, Arabidopsis thaliana,
EMBL:AC005167
Length = 315
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +3
Query: 327 MLLQNPQLAYALLQAQVIMRIVDPATAVTMLHPSNPVPPILLPGDKPAQTNTYIP 491
+L Q PQ + L + + D ++H S PP++LP + TN Y P
Sbjct: 69 LLHQPPQPSSPLYDSPPLSSAFDYPFLEDIIHSSYSPPPLILPASQ-ENTNNYSP 122
>At3g53330.1 68416.m05884 plastocyanin-like domain-containing
protein similar to mavicyanin SP:P80728 from [Cucurbita
pepo]
Length = 310
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Frame = +3
Query: 423 PSNPVPPILLPGDKPAQTNTYIPSNPPPANHRYT--IIPDRHPTSTTIP 563
P P PP +P++ NT P PP H + I P P S +P
Sbjct: 135 PITPSPPPPSKTHEPSRPNTPPPPPPPSKTHEPSRRITPSPPPPSKILP 183
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
T +P+G+GF Y D E A+ + +E+ G+ + V A
Sbjct: 145 TQRPRGFGFITY-DSEEAVEKVLLKTFHELNGKMVEVKRA 183
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 7 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 126
T +P+G+GF Y D E A+ + +E+ G+ + V A
Sbjct: 145 TQRPRGFGFITY-DSEEAVEKVLLKTFHELNGKMVEVKRA 183
>At2g25930.1 68415.m03112 hydroxyproline-rich glycoprotein family
protein identical to cDNA nematode responsive protein
GI:2213418
Length = 695
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +3
Query: 426 SNPVPPILLPGDKPAQTNTYIPSNPPP-ANHRYTIIPDRHPTSTTI 560
SN +P P PA P PPP NH+ +IP P+ I
Sbjct: 438 SNYMPFANNPPASPAPNGYCFPPQPPPSGNHQQWLIPVMSPSEGLI 483
>At2g23770.1 68415.m02839 protein kinase family protein /
peptidoglycan-binding LysM domain-containing protein
contains Pfam domains, PF00069: Protein kinase domain
and PF01476: LysM domain
Length = 612
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +3
Query: 432 PVPPILLP-GDKPAQTNTYIPSNPPP 506
P IL+P + PA TN+ IP PPP
Sbjct: 225 PFTTILIPLVNPPANTNSLIPPPPPP 250
>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 176
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Frame = +3
Query: 396 PATAVTMLHPSNPVPPILL--PGDKPAQTNTYIPSNPPP 506
P T P+NP PP+ P P T + S PPP
Sbjct: 58 PPPVTTAPPPANPPPPVSSPPPASPPPATPPPVASPPPP 96
>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 191
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Frame = +3
Query: 396 PATAVTMLHPSNPVPPILL--PGDKPAQTNTYIPSNPPP 506
P T P+NP PP+ P P T + S PPP
Sbjct: 58 PPPVTTAPPPANPPPPVSSPPPASPPPATPPPVASPPPP 96
>At1g23720.1 68414.m02994 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 895
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Frame = +3
Query: 426 SNPVPPILLPGDKPAQTN---TYIPSNPPP 506
S+P PP P KPA + Y+ S+PPP
Sbjct: 239 SSPPPPYYSPSPKPAYKSPPPPYVYSSPPP 268
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = +3
Query: 417 LHPSNPVPPILLPGDKPAQTNT---YIPSNPPP 506
++ S P PP P KPA ++ Y+ S+PPP
Sbjct: 563 VYHSPPPPPYYSPSPKPAYKSSPPPYVYSSPPP 595
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,735,160
Number of Sequences: 28952
Number of extensions: 307335
Number of successful extensions: 1440
Number of sequences better than 10.0: 164
Number of HSP's better than 10.0 without gapping: 1214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1418
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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