Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0892
(603 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0118 - 11474060-11475298 31 0.93
02_02_0712 + 13200174-13200761,13201966-13202616 30 1.2
12_02_1090 - 25994366-25995410,25995632-25995971,25997266-25997686 30 1.6
04_04_0583 - 26375850-26375971,26376070-26376139,26376227-263763... 29 2.1
05_01_0214 - 1615519-1616775 29 3.7
01_06_1275 - 35910992-35911342,35912157-35912390,35912573-359126... 29 3.7
01_06_0848 + 32426550-32426613,32427013-32427167,32428470-324285... 28 5.0
06_02_0306 + 14115751-14116450,14116882-14117691,14118957-14119141 28 6.5
11_06_0686 + 26280772-26281611 27 8.7
07_03_1619 + 28174991-28175804,28175945-28175968,28176075-281761... 27 8.7
06_01_0325 - 2366193-2366367,2367063-2367122,2367323-2367463,236... 27 8.7
02_04_0076 - 19486360-19488723 27 8.7
>04_03_0118 - 11474060-11475298
Length = 412
Score = 30.7 bits (66), Expect = 0.93
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = -3
Query: 370 DHYVSELHVVSEEARHVNRSVKWISERHGGDT*A---PATSTRSFIMVMSNVG 221
+HY+ + AR+ NR+V W+ GG A AT T +F+ + N G
Sbjct: 322 EHYIPTYLHLRHGARNANRTVTWVDWSRGGPHPARFGKATVTPAFVQAIRNNG 374
>02_02_0712 + 13200174-13200761,13201966-13202616
Length = 412
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -3
Query: 379 FSVDHYVSELHVVSEEARHVNRSVKWISERHGGDT*APATSTR 251
++ +HY+ + +R NRSV W+ HGG PA TR
Sbjct: 317 YADEHYLPTFLGIRHPSRVTNRSVTWVDWSHGGP--HPARFTR 357
>12_02_1090 - 25994366-25995410,25995632-25995971,25997266-25997686
Length = 601
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 165 GLEMQMYVIVSPVRTGMLLPTLDMTMMKDRVL--VAGAHVSPPCLSDIH 305
G+ YV+ GM L + + R L +A AH++PPCL+ +H
Sbjct: 348 GMGWARYVVAFGALKGMTTVLLVSAVGQARYLTHIARAHMAPPCLARVH 396
>04_04_0583 -
26375850-26375971,26376070-26376139,26376227-26376309,
26376452-26376629,26377390-26377851
Length = 304
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -2
Query: 212 TGADRRHDDVHLHLQTSNRTEG-QHKSLRESVARLAPPVLDHCLAISGRHHFA 57
T A ++ D+HLH+ TS T G + + LR R PV D L+ S R + A
Sbjct: 180 TVAVTQYGDLHLHVATSLVTVGSEFRKLRILGVRATAPVGDQNLSASTRTNMA 232
>05_01_0214 - 1615519-1616775
Length = 418
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +1
Query: 406 DRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDE 507
D GH G GH G H H G + H+D+
Sbjct: 183 DHGH-GHGHGHGHGHSHDHDHGGSDHDHHHHEDQ 215
>01_06_1275 -
35910992-35911342,35912157-35912390,35912573-35912653,
35913162-35913407,35913502-35913617,35914813-35915032
Length = 415
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 124 PLRDLHHQSLTIVWPSPEGIISLSITRRVERYSGIN 17
P R LHH L ++ PE +++ ++VE G N
Sbjct: 61 PPRGLHHHCLGVLSQGPEDVVAEYYQQQVEMLEGFN 96
>01_06_0848 +
32426550-32426613,32427013-32427167,32428470-32428526,
32428877-32428930,32429349-32429418,32429951-32432034
Length = 827
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -2
Query: 137 SLRESVARLAPPVLDHCLAISGRHHFAFHYTTSRKVLWDKS 15
S + + + VLD + HH A YT S + LW S
Sbjct: 693 SAGDGASLIIKSVLDRATELLTDHHAAASYTVSNRTLWQAS 733
>06_02_0306 + 14115751-14116450,14116882-14117691,14118957-14119141
Length = 564
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
Frame = +2
Query: 23 PRVPFDSSCNGKRNDAFRRWPDNGQGLVVQVSQRIPSETYAAPRYDWRF-GDADVRHRVA 199
P P + R D+ RWP G+ +++ + + AAP R+ G +
Sbjct: 317 PSPPLHVTKTKVRGDSPARWPTMGELSLLKARRLFQDDEKAAPPSAERYVGTLYTKVGDE 376
Query: 200 GPHRYALAHIGHDHDEGPCACRW 268
H+Y +G C C W
Sbjct: 377 VLHKYTTPTATPSTTKGDCFCNW 399
>11_06_0686 + 26280772-26281611
Length = 279
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Frame = +2
Query: 128 PSETYAAPRYDWRFGD--ADVRHRVAGPHR-YALAHIGHDHDEGPCACRWSS 274
P Y Y W+ D A H+ G H + A GH H P +C+W S
Sbjct: 207 PPPYYGYYLYYWQCTDGLAGGYHQQRGGHYCHCAAGDGHGHYYSPSSCQWHS 258
>07_03_1619 +
28174991-28175804,28175945-28175968,28176075-28176170,
28176285-28176466,28176623-28176836,28177262-28177499,
28177709-28177865,28177950-28178246
Length = 673
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/43 (34%), Positives = 17/43 (39%)
Frame = +2
Query: 164 RFGDADVRHRVAGPHRYALAHIGHDHDEGPCACRWSSCISTMP 292
R+G D + G YAL D D G C IS MP
Sbjct: 186 RYGTGDSWFQEGGSMVYALVQCTRDMDPGRCGACLQRIISEMP 228
>06_01_0325 -
2366193-2366367,2367063-2367122,2367323-2367463,
2368175-2368288,2368444-2368475,2368736-2368793,
2369263-2369434,2369584-2370334,2370743-2371036
Length = 598
Score = 27.5 bits (58), Expect = 8.7
Identities = 28/92 (30%), Positives = 42/92 (45%)
Frame = -3
Query: 289 HGGDT*APATSTRSFIMVMSNVGKSIPVRTGDTMTYICISKPPIVPRGSISL*GNPLRDL 110
H GD A A + R++ ++ +VG P T + Y + V G S + D
Sbjct: 281 HKGDKIASAATGRTYEVL--DVGIMHPELTPTGVLYT--GQVGYVISGMRSTKEARIGDT 336
Query: 109 HHQSLTIVWPSPEGIISLSITRRVERYSGINP 14
HQ+ +IV P PE I+S R +SG+ P
Sbjct: 337 LHQAKSIVEPLPENILSGFKPARHMVFSGLYP 368
>02_04_0076 - 19486360-19488723
Length = 787
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 221 AHIGHDHDEGPCACRWSSCISTMPLGYPFDRPIDM 325
AHI + PC WS+ IS L F+R I +
Sbjct: 436 AHILFSRTKDPCTVAWSAIISGSCLNGQFERAIHL 470
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,629,960
Number of Sequences: 37544
Number of extensions: 387313
Number of successful extensions: 1328
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1326
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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