Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0892
         (603 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20346| Best HMM Match : Herpes_UL3 (HMM E-Value=2.7)                32   0.41 
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)                   29   2.9  
SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.9  
SB_57023| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_41578| Best HMM Match : Apc15p (HMM E-Value=2.4)                    29   3.8  
SB_38713| Best HMM Match : p450 (HMM E-Value=0)                        29   3.8  
SB_4869| Best HMM Match : Coprinus_mating (HMM E-Value=2.8)            29   3.8  
SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)                   27   8.8  
SB_27251| Best HMM Match : Extensin_2 (HMM E-Value=0.077)              27   8.8  
SB_20600| Best HMM Match : zf-C3HC4 (HMM E-Value=0.65)                 27   8.8  
SB_42225| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 27   8.8  

>SB_20346| Best HMM Match : Herpes_UL3 (HMM E-Value=2.7)
          Length = 461

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = -3

Query: 466 VRVQVGEIVLHHDHLRGVHGLAGVRHAEVFSVDHYVSELHVVSEEARHVNRSV 308
           +   +G ++   DH+ G+H +       +  VDH +  +H + +E  HV R V
Sbjct: 140 IETDMGHVIREVDHVIGIHKIEKEVDHVIREVDHVIG-IHKIEKEVDHVIREV 191



 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = -3

Query: 466 VRVQVGEIVLHHDHLRGVHGLAGVRHAEVFSVDHYVSELHVVSEEARHV-NRSVKWISER 290
           +   +G ++   DH+ G+H +       +  VDH +  +H + +E  HV  + V  + E 
Sbjct: 79  IETDMGHVIREVDHVIGIHKIEKEVDHVIREVDHVIG-IHKIEKEVDHVIKQKVGHVIEV 137

Query: 289 HGGDT 275
           H  +T
Sbjct: 138 HKIET 142


>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
          Length = 2200

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = -2

Query: 146  QHKSLRESVARLAPPVLDHCLAISGRHHFAFHYTTSRKVLWDKSLHIH 3
            ++  LR++  ++   + +H L     HH   +Y  S K+L  ++ H+H
Sbjct: 1563 RYAELRKTAEKVYQSIAEHRLTQKYIHHSKEYYRHSSKILKSRTRHLH 1610


>SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1270

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = +1

Query: 346  HEVR*RNDLQKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDER 510
            + +R R++  +      H+  R  L D H+  R+ L     A +  L+ RH+  R
Sbjct: 953  NRLRDRHEASRNRLRDRHEASRNRLRDRHEASRNRLRNRHEASRNRLRDRHEASR 1007



 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +1

Query: 352  VR*RNDLQKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRH 498
            +R R+   +   H  H+  R  L D H+  R+ L     A ++ L+ RH
Sbjct: 900  LRDRHKASRIRLHDRHEASRNRLHDRHEASRNRLRDRHEASRKRLRDRH 948


>SB_57023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 388

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 8/95 (8%)
 Frame = -2

Query: 302 DIREAWWRYMSSSDKHTVLHHGHVQCGQEHTGADRRHDDV-----HLHLQTSNRTEGQH- 141
           D+  +WW + S++ + T  H       + H GA   H  V     + H+    R   +H 
Sbjct: 110 DMSTSWWGHFSNTSRATSRHEYITLWTRTHHGARYEHITVWTRPPYEHITKWTRPPYEHI 169

Query: 140 -KSLRESVARLAP-PVLDHCLAISGRHHFAFHYTT 42
            K  R     +   P  +H +  +   HF  H+TT
Sbjct: 170 TKWTRPPYEHITTRPRYEHIMVGTLFEHFTGHFTT 204


>SB_41578| Best HMM Match : Apc15p (HMM E-Value=2.4)
          Length = 391

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +1

Query: 430 HDEGRSHLPGLGHAGQEDLQRRHDDERMMN*SHDIVPNLN 549
           HD G     GL + G +DL RRH  +R  N S  +V N N
Sbjct: 135 HDNGTQCPKGLQYGGHDDLDRRH-KKRDRNSSGTLVFNDN 173


>SB_38713| Best HMM Match : p450 (HMM E-Value=0)
          Length = 500

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = -1

Query: 345 LLVKKLAMSIGLSNGY--PRGMVEIHELQRQAHGPSSWSCPMWARAYR 208
           L ++ LAM+     GY  P+G   I  L    H P  W  PM  R  R
Sbjct: 373 LAIQHLAMADTALAGYHIPKGTTVIVNLWAMGHDPKVWDAPMEFRPER 420


>SB_4869| Best HMM Match : Coprinus_mating (HMM E-Value=2.8)
          Length = 796

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = -1

Query: 138 VSEGIRCETCTTSP*PLSGHLRKASFRFPLHDESKG 31
           VSE   C +      PLSGH R  S   PL D S G
Sbjct: 501 VSETTSCPSIDDPDGPLSGHTRPFSSMEPLSDPSAG 536


>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
          Length = 2157

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 359  DVMIYRKDLGMSNTSKTVDTSEMVMMKDDLTYLD 460
            D+MIY +DL  ++T      +E+ + K D  Y D
Sbjct: 2088 DLMIYGQDLVCTDTYTAQQDNELTVFKGDWVYAD 2121


>SB_27251| Best HMM Match : Extensin_2 (HMM E-Value=0.077)
          Length = 1043

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 430 HDEGRSHLPGLGHA-GQEDLQRRHD 501
           H+EG+  LPG  H+ GQ  +Q+R +
Sbjct: 789 HEEGQQQLPGGNHSPGQHHMQQRRE 813


>SB_20600| Best HMM Match : zf-C3HC4 (HMM E-Value=0.65)
          Length = 963

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 258 AHGPSSWSCPMWARAYRCGPATR*RTSASPNLQS 157
           AH P   +C   A A   GP +R + SA+P + +
Sbjct: 875 AHAPQGVACIRCANACNQGPVSRKQVSANPGINT 908


>SB_42225| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 300

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 118 RDLHHQSLTIVWPSPEGIISLSITRRVERYS 26
           R LH + L + W +PE I+S   T   + +S
Sbjct: 193 RQLHRRPLPVRWMAPEAILSYRFTPETDIWS 223


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,612,412
Number of Sequences: 59808
Number of extensions: 431889
Number of successful extensions: 1320
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1314
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)