Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0892
         (603 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78198-6|CAB01572.2|  848|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z46937-5|CAA87057.1|  376|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z46937-2|CAB60996.1|  444|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U27124-1|AAA73482.1|  376|Caenorhabditis elegans MPK-1 protein.        28   5.9  
U03879-1|AAA18956.1|  444|Caenorhabditis elegans Sur-1 MAP kinas...    28   5.9  

>Z78198-6|CAB01572.2|  848|Caenorhabditis elegans Hypothetical
           protein F55C5.7 protein.
          Length = 848

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 19/56 (33%), Positives = 29/56 (51%)
 Frame = -2

Query: 272 SSSDKHTVLHHGHVQCGQEHTGADRRHDDVHLHLQTSNRTEGQHKSLRESVARLAP 105
           +SSD  +  H   ++   E TG D +  DV +  +TSN  E Q  + + S+ RL P
Sbjct: 180 NSSDSDSPNHAALLEPTHEQTGDDFQFPDVAIASETSN--EEQRTARKSSMKRLFP 233


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 134 ETYAAPRYDWRFGDADVRHRVAGPHRYALAHIGHDHDEG 250
           E + AP +    G+    H   G H +A AH GH  + G
Sbjct: 508 EHHHAPAHHGHHGEHGTHHGHHGEHHHAPAHHGHHGEHG 546


>Z46937-5|CAA87057.1|  376|Caenorhabditis elegans Hypothetical
           protein F43C1.2a protein.
          Length = 376

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 6   DMQGFIPEYLSTRRVMESEMMPSGDGQTMVKDWW 107
           D  GF+ EY++TR     E+M +  G T   D W
Sbjct: 182 DHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDVW 215


>Z46937-2|CAB60996.1|  444|Caenorhabditis elegans Hypothetical
           protein F43C1.2b protein.
          Length = 444

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 6   DMQGFIPEYLSTRRVMESEMMPSGDGQTMVKDWW 107
           D  GF+ EY++TR     E+M +  G T   D W
Sbjct: 250 DHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDVW 283


>U27124-1|AAA73482.1|  376|Caenorhabditis elegans MPK-1 protein.
          Length = 376

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 6   DMQGFIPEYLSTRRVMESEMMPSGDGQTMVKDWW 107
           D  GF+ EY++TR     E+M +  G T   D W
Sbjct: 182 DHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDVW 215


>U03879-1|AAA18956.1|  444|Caenorhabditis elegans Sur-1 MAP kinase
           protein.
          Length = 444

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 6   DMQGFIPEYLSTRRVMESEMMPSGDGQTMVKDWW 107
           D  GF+ EY++TR     E+M +  G T   D W
Sbjct: 250 DHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDVW 283


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,333,554
Number of Sequences: 27780
Number of extensions: 294414
Number of successful extensions: 886
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)