Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0892
         (603 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g63100.1 68416.m07087 glycine-rich protein                          30   1.4  
At1g57570.1 68414.m06533 jacalin lectin family protein similar t...    29   3.1  
At5g39970.1 68418.m04847 expressed protein low similarity to up-...    28   5.5  
At5g37040.1 68418.m04442 F-box family protein contains Pfam prof...    28   5.5  
At3g20410.1 68416.m02585 calmodulin-domain protein kinase isofor...    28   5.5  
At1g50700.1 68414.m05701 calcium-dependent protein kinase, putat...    28   5.5  
At5g13110.1 68418.m01502 glucose-6-phosphate 1-dehydrogenase, pu...    27   9.6  
At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein ...    27   9.6  
At3g15160.1 68416.m01917 expressed protein                             27   9.6  
At1g14520.1 68414.m01721 oxygenase-related similar to myo-inosit...    27   9.6  

>At3g63100.1 68416.m07087 glycine-rich protein 
          Length = 199

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/34 (44%), Positives = 15/34 (44%)
 Frame = +1

Query: 397 HQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRH 498
           H    GH   GHD G  H  G GH G     RRH
Sbjct: 77  HGYGHGHREHGHDRGHGHGRGHGH-GHGHGHRRH 109


>At1g57570.1 68414.m06533 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile PF01419
           jacalin-like lectin domain
          Length = 614

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 427 HLRG-VHGLAGVRHAEVFSVDHYVSELHVVSEEARHVNRS 311
           H+ G +HGL+G    + F +DH  +E H+V  E  + + S
Sbjct: 221 HINGSIHGLSGSGFTQTFEIDHLNNE-HLVCVEGYYDDES 259


>At5g39970.1 68418.m04847 expressed protein low similarity to
           up-regulated by thyroid hormone in tadpoles; expressed
           specifically in the tail and only at metamorphosis;
           membrane bound or extracellular protein; C-terminal
           basic region [Xenopus laevis] GI:1234787
          Length = 690

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 236 DHDEGPCACRWSSCISTMPLGYPFDRPIDMASFFTNNMKFA 358
           D D G   C++ S IS       + RP+++   FT  + F+
Sbjct: 318 DSDNGATPCQYHSVISEFFTNGTYVRPVEVRRIFTMGLPFS 358


>At5g37040.1 68418.m04442 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 242

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -3

Query: 499 HDVFVSPLDQHVRVQVGEIVLHHDHLRGVHGLAGVRHAEVFSVDHY 362
           + + V+  D +  + V ++    DHLRG H L G      F  DH+
Sbjct: 63  YSISVNLNDDNPTINVRDLCFG-DHLRGQHSLYGTCDGNFFLYDHF 107


>At3g20410.1 68416.m02585 calmodulin-domain protein kinase isoform 9
           (CPK9) identical to calmodulin-domain protein kinase
           CDPK isoform 9 [Arabidopsis thaliana]
           gi|1399265|gb|AAB03242
          Length = 541

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = +2

Query: 296 GYPFDRPIDMASFFTNNMKFADVMIYRKDLGMSNTSKTVDTSEMVMMKDDLTYLDSDMLV 475
           G   D+PID A    + MK    M   K L +   ++ +DT E+  +K     +D+D   
Sbjct: 353 GEASDKPIDSAVL--SRMKQFRAMNKLKKLALKVIAENIDTEEIQGLKAMFANIDTDNSG 410

Query: 476 KRTYKDV 496
             TY+++
Sbjct: 411 TITYEEL 417


>At1g50700.1 68414.m05701 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calmodulin-domain protein
           kinase CDPK isoform 9 [Arabidopsis thaliana]
           gi|1399265|gb|AAB03242
          Length = 521

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = +2

Query: 296 GYPFDRPIDMASFFTNNMKFADVMIYRKDLGMSNTSKTVDTSEMVMMKDDLTYLDSDMLV 475
           G   D+PID A    + MK    M   K L +   ++ +DT E+  +K     +D+D   
Sbjct: 335 GEASDKPIDSAVL--SRMKQFRAMNKLKKLALKVIAENIDTEEIQGLKAMFANIDTDNSG 392

Query: 476 KRTYKDV 496
             TY+++
Sbjct: 393 TITYEEL 399


>At5g13110.1 68418.m01502 glucose-6-phosphate 1-dehydrogenase,
           putative / G6PD, putative similar to SP|Q43839
           Glucose-6-phosphate 1-dehydrogenase, chloroplast
           precursor (EC 1.1.1.49) (G6PD) {Solanum tuberosum};
           contains Pfam profiles PF02781: Glucose-6-phosphate
           dehydrogenase C-terminal, PF00479: Glucose-6-phosphate
           dehydrogenase NAD binding domain
          Length = 596

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 127 NPLRDLHHQSLTIVWPSPEGIISLSITRRVERYSG 23
           +P+    H+SL+ +  SP+G+  L +  R +R SG
Sbjct: 22  SPVNGDRHRSLSFLSASPQGLNPLDLCVRFQRKSG 56


>At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein /
            transcription factor jumonji (jmj) family protein
            contains Pfam domians PF02375: jmjN domain, PF02373: jmjC
            domain and PF00096: Zinc finger, C2H2 type
          Length = 1327

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +2

Query: 206  HRYALAHIGHDHDEGPCACRWSSCIST 286
            H+Y + H     DE P  C W  C  T
Sbjct: 1252 HKYLVLHQRVHKDERPFECSWKGCSMT 1278


>At3g15160.1 68416.m01917 expressed protein
          Length = 562

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +2

Query: 41  SSCNGKRNDAFRRWPDNGQGLVVQVSQRIPSETYAAPRYDWRFGD 175
           S  + KR      W + GQ +V  +   I SE    P +D+ F D
Sbjct: 513 SRVSEKRFPGTVNWSEGGQKMVAHIPFHILSEQGGPPFHDFAFSD 557


>At1g14520.1 68414.m01721 oxygenase-related similar to myo-inositol
           oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
          Length = 311

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 18/65 (27%), Positives = 25/65 (38%)
 Frame = +2

Query: 263 RWSSCISTMPLGYPFDRPIDMASFFTNNMKFADVMIYRKDLGMSNTSKTVDTSEMVMMKD 442
           +W+    T P+G  FD  I    +F  N  + D   Y    G+      +D   M    D
Sbjct: 163 QWAVVGDTFPVGCAFDESIVHHKYFKENPDY-DNPSYNSKYGIYTEGCGLDNVLMSWGHD 221

Query: 443 DLTYL 457
           D  YL
Sbjct: 222 DYMYL 226


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,839,974
Number of Sequences: 28952
Number of extensions: 284255
Number of successful extensions: 890
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)