Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0891
         (692 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    23   1.8  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   1.8  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   1.8  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   1.8  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   1.8  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   3.1  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 461 YTETLELISQGGWRI 417
           Y E +EL  +GGW++
Sbjct: 299 YNEIVELQKEGGWKV 313


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +1

Query: 37  HSDDIERVQKFLRILGYCLQSGRSDIN 117
           H+DD  +V +F+++L   +    SD++
Sbjct: 626 HNDDETQVNRFVKLLVATIDEAASDVH 652


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +1

Query: 37  HSDDIERVQKFLRILGYCLQSGRSDIN 117
           H+DD  +V +F+++L   +    SD++
Sbjct: 626 HNDDETQVNRFVKLLVATIDEAASDVH 652


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +1

Query: 37  HSDDIERVQKFLRILGYCLQSGRSDIN 117
           H+DD  +V +F+++L   +    SD++
Sbjct: 626 HNDDETQVNRFVKLLVATIDEAASDVH 652


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +1

Query: 37  HSDDIERVQKFLRILGYCLQSGRSDIN 117
           H+DD  +V +F+++L   +    SD++
Sbjct: 626 HNDDETQVNRFVKLLVATIDEAASDVH 652


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +1

Query: 256 SLCYGHIKIIYHTLNPLVRMVGQFF---LLLRF 345
           S+  G I  ++H L+ L+R+  + F   LLL F
Sbjct: 848 SVALGKICTLHHHLSKLIRLFNEIFGHGLLLMF 880


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,505
Number of Sequences: 336
Number of extensions: 3649
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)