Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0891
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1340 + 36424426-36424542,36425212-36425283,36425383-364254...    28   6.1  

>01_06_1340 +
           36424426-36424542,36425212-36425283,36425383-36425486,
           36425567-36425669,36425757-36425918,36426043-36426320,
           36429428-36429578,36429795-36429959,36430077-36430154,
           36430284-36430373,36430460-36430546,36430636-36430722,
           36430779-36430890,36431033-36431136,36431435-36431510,
           36431954-36432104,36432246-36432314,36432408-36432474,
           36433060-36433089
          Length = 700

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/63 (22%), Positives = 29/63 (46%)
 Frame = -1

Query: 410 IMSMGSRNHITQGGL*TSPTI*NLSNKKNCPTILTKGFKV*YIIFICP*HKEFTKIEXQA 231
           ++S G ++ + +GG+         ++ K  P ++  GF +  II +    K  T    +A
Sbjct: 244 LISFGEKSRVGRGGMQAKVAAAFTASSKGIPVVIASGFAIDSIIKVMRGEKIGTLFHREA 303

Query: 230 LKW 222
            +W
Sbjct: 304 NQW 306


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,452,903
Number of Sequences: 37544
Number of extensions: 334186
Number of successful extensions: 533
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)