Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0891
         (692 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42822| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_33594| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_42820| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_42391| Best HMM Match : Hydrolase (HMM E-Value=5.1e-17)             28   6.2  
SB_42286| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_42822| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -1

Query: 521 RPISALSSNAFRFEG*VSRNYTETLELISQGGWRIYVIMSMGSRNHI 381
           RP +   + A R  G     Y + +E  S GGW + V +S  SRNHI
Sbjct: 96  RPSTPSGNYAMRVRGFKRTIYCD-MET-SGGGWSLVVSISASSRNHI 140


>SB_33594| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 566

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = -1

Query: 533 KSFIRPI-SALSSNAFR-FEG*VSRNYTE-TLELISQGGWRIYVIMSMGSRNHITQGGL 366
           KSFI PI SAL   +    +  + R Y + T EL++QGG  I     + +R  +   GL
Sbjct: 54  KSFIDPIPSALQKVSLASLQEKIDRTYVDHTPELVAQGGVSIKSFTDISTRTQLFTNGL 112


>SB_42820| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -1

Query: 521 RPISALSSNAFRFEG*VSRNYTETLELISQGGWRIYVIMSMGSRNHI 381
           RP +   + A R  G     Y + +E  S GGW + V +S  SRNHI
Sbjct: 191 RPSTPSGNYAMRVRGFKRTIYCD-MET-SGGGWSLVVSISASSRNHI 235


>SB_42391| Best HMM Match : Hydrolase (HMM E-Value=5.1e-17)
          Length = 254

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
 Frame = +1

Query: 13  VWSPYYRVHSDDIER------VQKFLRILGYC 90
           VW P+++ H D+IER        K    +GYC
Sbjct: 33  VWIPWFKAHVDEIERSTGMDLADKLYEAVGYC 64


>SB_42286| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1820

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 406  IMT*MRHPP*DISSKVSV*LRLTHPSNRNALLLKAE 513
            + T    PP D++SKV   L   H  NR ++L K E
Sbjct: 1229 VSTKKNQPPNDVASKVQSFLNSYHDQNRYSVLKKGE 1264


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,695,969
Number of Sequences: 59808
Number of extensions: 407136
Number of successful extensions: 704
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)