Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0891
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical p...    29   2.4  
Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF083226-1|AAD03684.1|  560|Caenorhabditis elegans nuclear recep...    29   4.2  
AF036702-12|AAP31437.1|  559|Caenorhabditis elegans Nuclear horm...    29   4.2  
AF036702-11|AAP31436.1|  560|Caenorhabditis elegans Nuclear horm...    29   4.2  
U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical p...    28   5.5  
U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical pr...    28   7.3  

>Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical
           protein F36H1.2c protein.
          Length = 1427

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/48 (22%), Positives = 29/48 (60%)
 Frame = +1

Query: 157 LYKILHSHIDSMELLLNISINSHLRAXNSILVNSLCYGHIKIIYHTLN 300
           ++ +  +H+D ++LL+N  +N+  +  ++ L+ +   GH+ ++   LN
Sbjct: 134 MWAVYKNHLDVVDLLVNAKVNACDKFGSTALIWAARKGHLPVVQLLLN 181


>Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical
           protein F36H1.2b protein.
          Length = 1379

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/48 (22%), Positives = 29/48 (60%)
 Frame = +1

Query: 157 LYKILHSHIDSMELLLNISINSHLRAXNSILVNSLCYGHIKIIYHTLN 300
           ++ +  +H+D ++LL+N  +N+  +  ++ L+ +   GH+ ++   LN
Sbjct: 134 MWAVYKNHLDVVDLLVNAKVNACDKFGSTALIWAARKGHLPVVQLLLN 181


>Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical
           protein F36H1.2a protein.
          Length = 1398

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/48 (22%), Positives = 29/48 (60%)
 Frame = +1

Query: 157 LYKILHSHIDSMELLLNISINSHLRAXNSILVNSLCYGHIKIIYHTLN 300
           ++ +  +H+D ++LL+N  +N+  +  ++ L+ +   GH+ ++   LN
Sbjct: 134 MWAVYKNHLDVVDLLVNAKVNACDKFGSTALIWAARKGHLPVVQLLLN 181


>AF083226-1|AAD03684.1|  560|Caenorhabditis elegans nuclear receptor
           NHR-8 protein.
          Length = 560

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/41 (41%), Positives = 19/41 (46%)
 Frame = +3

Query: 159 VQNFTLPYRFHGTSVKYFYQQPLKSLXFDFGKLFVLRTYKN 281
           V N     R H T  KYF Q  LK L F++GK      Y N
Sbjct: 483 VSNLRDSKRVHSTQAKYF-QMLLKLLTFEYGKSRADIAYSN 522


>AF036702-12|AAP31437.1|  559|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 8, isoform b protein.
          Length = 559

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/41 (41%), Positives = 19/41 (46%)
 Frame = +3

Query: 159 VQNFTLPYRFHGTSVKYFYQQPLKSLXFDFGKLFVLRTYKN 281
           V N     R H T  KYF Q  LK L F++GK      Y N
Sbjct: 482 VSNLRDSKRVHSTQAKYF-QMLLKLLTFEYGKSRADIAYSN 521


>AF036702-11|AAP31436.1|  560|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 8, isoform a protein.
          Length = 560

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/41 (41%), Positives = 19/41 (46%)
 Frame = +3

Query: 159 VQNFTLPYRFHGTSVKYFYQQPLKSLXFDFGKLFVLRTYKN 281
           V N     R H T  KYF Q  LK L F++GK      Y N
Sbjct: 483 VSNLRDSKRVHSTQAKYF-QMLLKLLTFEYGKSRADIAYSN 522


>U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical
           protein C56C10.12 protein.
          Length = 1599

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 169 KFCTNLIY*IKIPMAIHNLCQNDLTA 92
           +FC +L+  +K+P    +L QNDLTA
Sbjct: 896 QFCWDLLVKLKLPTIPSSLVQNDLTA 921


>U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical
           protein T26A5.5a protein.
          Length = 1076

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 405 HYDVNAPPTLRYKF*GFSIVTADSPFKPKRITT*SRNRAYKRF 533
           HYD   PPT R K+   S+ T ++P         SRN+ +K +
Sbjct: 829 HYDGQKPPTKRAKYEAISVDTYETPSS-------SRNKEHKEY 864


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,441,531
Number of Sequences: 27780
Number of extensions: 314471
Number of successful extensions: 522
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)