Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0891
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69280.1 68414.m07943 expressed protein                             28   6.8  
At4g01690.2 68417.m00220 protoporphyrinogen oxidase (PPOX) ident...    27   8.9  
At4g01690.1 68417.m00219 protoporphyrinogen oxidase (PPOX) ident...    27   8.9  

>At1g69280.1 68414.m07943 expressed protein
          Length = 400

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -1

Query: 110 SERPDCRQ*PNILRNFCTLSISSLWTL*YGDHT 12
           S++P+    P + +N  TLS  SL++L  GD+T
Sbjct: 153 SDQPERNSLPTLEKNLSTLSNDSLFSLSIGDNT 185


>At4g01690.2 68417.m00220 protoporphyrinogen oxidase (PPOX)
           identical to SP|P55826
          Length = 506

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -1

Query: 572 SKNIKVTVT*HLAKSFIRPISALSSNA 492
           SK++ +TV  H+A   +RP+S  ++NA
Sbjct: 330 SKSVVMTVPSHVASGLLRPLSESAANA 356


>At4g01690.1 68417.m00219 protoporphyrinogen oxidase (PPOX)
           identical to SP|P55826
          Length = 537

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -1

Query: 572 SKNIKVTVT*HLAKSFIRPISALSSNA 492
           SK++ +TV  H+A   +RP+S  ++NA
Sbjct: 330 SKSVVMTVPSHVASGLLRPLSESAANA 356


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,541,565
Number of Sequences: 28952
Number of extensions: 289234
Number of successful extensions: 556
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)