Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0890
         (691 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   2.4  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    22   4.1  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   7.2  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -2

Query: 588 FQNWNKSPAGTPS 550
           F  W KSP G PS
Sbjct: 64  FHPWKKSPQGAPS 76


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 650 CTESANSRNPVACSTFRPFPSFKTGINPLLAR 555
           CT++   R+P  CS F    ++  G  PL  R
Sbjct: 422 CTKAGYVRDPDDCSIFYYCLAYNGGFVPLEQR 453


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 475 FWNNTTRFFVGVGTYRSMKAGLPNEDAP 392
           FW++ + F    GT+      +P ED P
Sbjct: 176 FWHSHSGFQRSDGTFGPFIVRVPEEDNP 203


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,636
Number of Sequences: 336
Number of extensions: 3702
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)