Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0890
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    49   7e-07
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.9  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    27   2.6  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   3.4  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    26   5.9  
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    25   7.8  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   7.8  

>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 48.8 bits (111), Expect = 7e-07
 Identities = 22/53 (41%), Positives = 35/53 (66%)
 Frame = -1

Query: 412  LPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMD 254
            +PN D+ G++ A+ FL  NTK ++   EL +  +I+  G +V+V+GGGDT  D
Sbjct: 1860 IPNRDSKGIHFAMEFLHKNTKSLLD-SELKDGNYISAKGKDVIVIGGGDTGND 1911



 Score = 30.3 bits (65), Expect = 0.27
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = -3

Query: 566  LLARRREIFSAMGDSLRTQCEVGK--DVSLDSLLEQYDAVL 450
            ++ RR ++    G  + T  EVGK  DVSLD L + YDAV+
Sbjct: 1807 VVERRIQLMIDEGIEVLTNVEVGKNGDVSLDELHKVYDAVV 1847


>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 390

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 209 AYRRDEANMPGSKKEVKNAREEGANFEFNVQPVALELNEQGHVCGI 72
           AYR  + +M  SK ++ ++  E  +F  N     +ELN    + GI
Sbjct: 193 AYRLSKLSMGNSKSDLSHSDNETGHFYSNFFSQVMELNASVTISGI 238


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 340 GLEELPEEPFINTAGLNVVVLGGGD 266
           G+ EL ++  I+ AGLN VVLG  D
Sbjct: 178 GIMELLKDNKISVAGLNAVVLGRSD 202


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +3

Query: 414  PAFMER*VPTPTKNRVVLFQKRIQRDIFTHFTLSSK*IPHRAE 542
            P+F+E  +P+  ++ + LFQ+ +Q  +F H T ++  + H  E
Sbjct: 2305 PSFLEV-LPSDLRDEL-LFQEAVQMRLFDHATRNNNSVDHEVE 2345


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +1

Query: 427 NGKCLRQRRTASYCSKSESKETSLPTSH*VRSESPIALK-ISRRRASRGFIPVLKEGN 597
           +G    +   +SY SKS+S  +S+ TS+   +E P+A K  +   A++G  P     N
Sbjct: 183 SGNMQNKSGVSSYSSKSQSVNSSV-TSNPPHTEEPVAAKPEASSTATKGPRPTTSASN 239


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = +1

Query: 400 LHWVNPLSWNGKCLRQRRTASYCSKSESKETSLPTSH*VRSESPIALKI 546
           +H V  L W G C +     S    SE     LP    V  ++P+ L I
Sbjct: 259 MHSVAKLGWAGLCSKFCEIVSSIPDSEPLNWMLPCWRDVMHDTPLTLAI 307


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 504  FTLSSK*IPHRAEDFPTACQQGIYSSFERR 593
            +++ S   PH  + F  ACQQ + SS   R
Sbjct: 1558 YSVESSATPHLLKQFEQACQQALSSSQRTR 1587


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,985,629
Number of Sequences: 5004
Number of extensions: 63258
Number of successful extensions: 167
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)