Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0890
(691 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0276 - 28084746-28085003,28085103-28085357,28085531-280857... 49 4e-06
05_07_0059 + 27402365-27402733,27402848-27402982,27403070-274031... 45 7e-05
12_02_0503 - 19756561-19757991,19758606-19759967 31 1.1
11_08_0002 - 27477335-27477841 29 4.6
04_04_0170 - 23268714-23268950,23269040-23269303,23269379-232694... 29 4.6
01_07_0111 - 41137822-41138973,41139453-41139540,41139850-411399... 29 4.6
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 28 6.1
06_03_0685 - 23499779-23500204 28 6.1
12_02_1277 + 27497773-27500241 28 8.0
02_05_0850 + 32209798-32210086,32210779-32212316 28 8.0
>01_06_0276 - 28084746-28085003,28085103-28085357,28085531-28085798,
28085948-28086253,28086369-28086643,28087034-28087252,
28087486-28089015,28089236-28089397,28089512-28089666,
28090195-28091064,28091363-28091832,28091917-28091981,
28092105-28092448,28092531-28092710,28092817-28092920,
28093053-28093162,28093648-28093744,28094138-28094238,
28094324-28094476,28094561-28094674,28094795-28094884,
28094960-28095307
Length = 2157
Score = 48.8 bits (111), Expect = 4e-06
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Frame = -1
Query: 538 ARWGIHFELNVKWVKMSLWI--RFWNNTTRFFVGVGTYRSMKAGLPNEDAPGVYDALPFL 365
A GI F +N L+ R + + G + G+P + GV+ A+ FL
Sbjct: 1858 AEEGITFVVNANVGSDPLYSIERLRSENDAVILACGATKPRDLGIPGRELSGVHFAMEFL 1917
Query: 364 IANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDVCV 245
ANTK ++ L + +I+ G VVV+GGGDT D C+
Sbjct: 1918 HANTKSLLD-SNLEDGRYISAKGKKVVVIGGGDTGTD-CI 1955
>05_07_0059 + 27402365-27402733,27402848-27402982,27403070-27403183,
27403297-27403449,27403544-27403644,27403945-27404041,
27404542-27404651,27404775-27404878,27405129-27405308,
27405398-27405741,27405841-27405905,27405981-27406450,
27406939-27407793,27408045-27408116,27408475-27408575,
27409069-27409170,27409295-27409456,27409665-27411230,
27411384-27411602,27413924-27414198,27414291-27414596,
27414727-27415012,27415085-27415087,27415162-27415416,
27415537-27415803
Length = 2236
Score = 44.8 bits (101), Expect = 7e-05
Identities = 22/56 (39%), Positives = 34/56 (60%)
Frame = -1
Query: 412 LPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDVCV 245
+P + G++ A+ FL ANTK ++ L + +I+ G VVV+GGGDT D C+
Sbjct: 1977 IPGRELAGIHFAMEFLHANTKSLLD-SNLEDGNYISAQGRKVVVIGGGDTGTD-CI 2030
>12_02_0503 - 19756561-19757991,19758606-19759967
Length = 930
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -1
Query: 373 PFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDVCVPHCAT 230
PF T + + L+ LP+ +I ++ + VV G DT+ DV PH T
Sbjct: 597 PFGYLWTLKHLFLKNLPKLEYIASSSYSTVVYGYRDTSPDVLPPHLIT 644
>11_08_0002 - 27477335-27477841
Length = 168
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 322 EEPFINTAGLNVVVLGGGDTAM 257
E+P + TAG+ VV +GG AM
Sbjct: 101 EDPLLTTAGMTVVAVGGATMAM 122
>04_04_0170 -
23268714-23268950,23269040-23269303,23269379-23269494,
23269574-23269792,23269961-23270080,23270170-23270283,
23271870-23271946,23272527-23272657
Length = 425
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 257 GCLRTALRHGASNVTCAYRRDEANMPGSKKEVK 159
GCL T + G +++C RR N+ SKK+++
Sbjct: 76 GCLITVVIVGVVSISCHLRRRAHNLKRSKKDIE 108
>01_07_0111 -
41137822-41138973,41139453-41139540,41139850-41139969,
41140165-41140211,41140796-41141029,41141305-41141505,
41141506-41143407,41144140-41145303,41145574-41145879
Length = 1737
Score = 28.7 bits (61), Expect = 4.6
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Frame = -1
Query: 553 VGKSSARWGIHFELNVKWVKMSLWIRFWNNTTRFFVGVGTYR--SMKAGLPNEDAPGVYD 380
+GK++ + + V+ M +W+ + +G R + L N + V D
Sbjct: 202 LGKTTLAQAVFADKRVRVFDMKIWVYVSEDFDLLKIGKAIIRGANRSISLDNCNLQFVQD 261
Query: 379 ALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGG 269
L +AN + ++GL++L EE N L ++ GG
Sbjct: 262 NLIKELANRRYLIGLDDLWEEYGENLEKLKQMLQHGG 298
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 28.3 bits (60), Expect = 6.1
Identities = 20/61 (32%), Positives = 26/61 (42%)
Frame = -2
Query: 462 RRGSSLA*ALTVP*KRVYPMKMRRAFMTRCRSSLPTLNR*WGSKSYRKSRLSIPPDLTSW 283
RR S A LT P + P R + S P LNR G + +R+S P L W
Sbjct: 203 RRSPSPASTLTPPRRSPSPASRRMS-----TGSTPALNRTRGPSPVKTNRISSSPKLQGW 257
Query: 282 Y 280
+
Sbjct: 258 H 258
>06_03_0685 - 23499779-23500204
Length = 141
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +2
Query: 110 PPAGR*IRSWPPLRGR 157
PP G IR WPP RGR
Sbjct: 42 PPRGGRIRRWPPRRGR 57
>12_02_1277 + 27497773-27500241
Length = 822
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +3
Query: 21 PPTPLGIRLSKTRAQETNPADVTLFIQLKRH 113
PP PLG RL + + P V + + RH
Sbjct: 588 PPRPLGFRLVNQKVLQLAPCSVGILVDRHRH 618
>02_05_0850 + 32209798-32210086,32210779-32212316
Length = 608
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 1 RYQAYRYRRRPWASGSPRRVRRKRI 75
RY++Y YRR P SP V R R+
Sbjct: 130 RYESYLYRRNPGRRPSPHLVARLRM 154
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,966,387
Number of Sequences: 37544
Number of extensions: 504005
Number of successful extensions: 1529
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1528
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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