Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0890
         (691 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42181| Best HMM Match : Pyr_redox_2 (HMM E-Value=0.00013)          116   2e-26
SB_24445| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.50 
SB_16761| Best HMM Match : PDZ (HMM E-Value=1.6e-08)                   30   2.0  
SB_35453| Best HMM Match : Pyr_redox (HMM E-Value=0.044)               29   2.7  
SB_33032| Best HMM Match : Prothymosin (HMM E-Value=0.78)              29   3.6  
SB_54151| Best HMM Match : PAN (HMM E-Value=0.00084)                   29   4.7  
SB_6778| Best HMM Match : fn3 (HMM E-Value=0.13)                       28   8.2  
SB_54090| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.5e-05)           28   8.2  

>SB_42181| Best HMM Match : Pyr_redox_2 (HMM E-Value=0.00013)
          Length = 201

 Score =  116 bits (279), Expect = 2e-26
 Identities = 48/75 (64%), Positives = 63/75 (84%)
 Frame = -3

Query: 254 CLRTALRHGASNVTCAYRRDEANMPGSKKEVKNAREEGANFEFNVQPVALELNEQGHVCG 75
           C+RT++R GA +VTCAYRRDE NMPGS++EVKNAREEG  F+FNVQP+ +E+N  G V G
Sbjct: 31  CVRTSVRQGAKHVTCAYRRDEENMPGSRREVKNAREEGVEFKFNVQPLGIEVNGNGKVSG 90

Query: 74  IRFLRTRLGEPDAQG 30
           ++ +RT +GEPDA+G
Sbjct: 91  VKMVRTEMGEPDAKG 105



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 21/33 (63%), Positives = 24/33 (72%)
 Frame = -1

Query: 343 MGLEELPEEPFINTAGLNVVVLGGGDTAMDVCV 245
           MG  E  +EPF++  G  VVVLGGGDTAMD CV
Sbjct: 1   MGFGETRDEPFVSMEGKRVVVLGGGDTAMD-CV 32


>SB_24445| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = -1

Query: 619 WLAQPFGHSLLSKL-E*IPCWHAVGKSSARWGIHFELNVKWVKMSLW-IRFWNNTTRFFV 446
           W A  +   LLS++ +  P   +VG  S+     FE+N  W   +++ +RF  NTT  F+
Sbjct: 155 WTAFLYDVCLLSRMNDGSPAIFSVGDCSSLLCQLFEMNNAWELPAVFTVRFGENTTHVFL 214

Query: 445 GVG 437
           G G
Sbjct: 215 GTG 217


>SB_16761| Best HMM Match : PDZ (HMM E-Value=1.6e-08)
          Length = 889

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = -3

Query: 251 LRTALRHGASNV----TCAYRRDEANMPGSKKEVKNAREEGANFEF 126
           ++ + RHG S V    TCAYR D   +  +K   K    +G  F+F
Sbjct: 561 IQASSRHGTSKVVLVVTCAYRDDFDCVTETKSGCKKTNSDGCAFDF 606


>SB_35453| Best HMM Match : Pyr_redox (HMM E-Value=0.044)
          Length = 189

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -1

Query: 316 PFINTAGLNVVVLGGGDTAMDVCV 245
           P ++  G +V+V+GGGDT +D C+
Sbjct: 14  PSLDATGKHVIVIGGGDTGVD-CI 36


>SB_33032| Best HMM Match : Prothymosin (HMM E-Value=0.78)
          Length = 508

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 63  AHASWRAGCPGASAVSISLIS 1
           AH SWRA CP     SI+L++
Sbjct: 410 AHQSWRAECPDEGVCSIALLN 430


>SB_54151| Best HMM Match : PAN (HMM E-Value=0.00084)
          Length = 326

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +1

Query: 91  CSFSSSATGWTLNSKLAPSSRAFFTSFFEPGMLASSRR*AQVTLLAP 231
           C   ++  GWTL ++  P  R+  T+F+      S+ +   V + +P
Sbjct: 144 CDMKTNGGGWTLVTRNEPLKRSLVTTFYADYRYISTEKLGTVLVTSP 190


>SB_6778| Best HMM Match : fn3 (HMM E-Value=0.13)
          Length = 464

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = +3

Query: 489 DIFTHFTLSSK*IPHRAEDFPTACQQGIYSSFERREWPKG*ASHRISGIGGFGTPSTPHG 668
           DIF + +L  + +PHR   +PT  + G+ ++  R       A     G+ G      PH 
Sbjct: 347 DIFRNNSLKCRHMPHRWPPWPTLTRMGLMAALTRMGLVAALAHPHSHGLNG-----RPHS 401

Query: 669 H 671
           H
Sbjct: 402 H 402


>SB_54090| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.5e-05)
          Length = 700

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = -1

Query: 289 VVVLGGGDTAMDVCVP--HCATARV 221
           V+VLG GDTA D C     C   RV
Sbjct: 324 VIVLGAGDTAFDCCTSALRCGARRV 348


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,195,507
Number of Sequences: 59808
Number of extensions: 509953
Number of successful extensions: 1632
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1631
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)