Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0890
(691 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical pr... 36 0.036
Z49889-5|CAA90070.1| 2207|Caenorhabditis elegans Hypothetical pr... 32 0.44
Z49868-5|CAA90032.1| 2207|Caenorhabditis elegans Hypothetical pr... 32 0.44
Z83120-6|CAB76722.1| 809|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z81491-13|CAN86583.1| 181|Caenorhabditis elegans Hypothetical p... 30 1.8
AF016683-9|AAB66197.1| 299|Caenorhabditis elegans Hypothetical ... 30 1.8
Z27078-3|CAA81585.1| 251|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z68753-6|CAD45610.1| 597|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z68753-5|CAB54512.2| 613|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z68753-4|CAB54511.2| 606|Caenorhabditis elegans Hypothetical pr... 28 5.5
AY043268-1|AAK85706.1| 606|Caenorhabditis elegans CCR4 protein. 28 5.5
U13070-4|AAC46640.2| 531|Caenorhabditis elegans Aldehyde dehydr... 27 9.6
>U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical
protein C25F6.3 protein.
Length = 1059
Score = 35.5 bits (78), Expect = 0.036
Identities = 21/66 (31%), Positives = 34/66 (51%)
Frame = -3
Query: 254 CLRTALRHGASNVTCAYRRDEANMPGSKKEVKNAREEGANFEFNVQPVALELNEQGHVCG 75
C +ALR GAS VT A+R+ + +E++ A+EE F P + + + G +
Sbjct: 361 CATSALRCGASRVTIAFRKGFTGIRAVPEEMEAAKEEKCEFLPFSAPRKINVKD-GRIVS 419
Query: 74 IRFLRT 57
I F +T
Sbjct: 420 IEFNKT 425
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = -1
Query: 289 VVVLGGGDTAMDVCVP--HCATARVT 218
VVVLG GDTAMD C +RVT
Sbjct: 349 VVVLGAGDTAMDCATSALRCGASRVT 374
>Z49889-5|CAA90070.1| 2207|Caenorhabditis elegans Hypothetical protein
W07E11.1 protein.
Length = 2207
Score = 31.9 bits (69), Expect = 0.44
Identities = 21/68 (30%), Positives = 37/68 (54%)
Frame = -1
Query: 448 VGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGG 269
V G+ + + DA GV A+ +L + ++ G +++ E ++ A V++LGGG
Sbjct: 1937 VCTGSTTARDLNVEGRDAKGVCFAMEYLEKSQRRRAG-DDVSWEG-LDPANKKVIILGGG 1994
Query: 268 DTAMDVCV 245
DTA D C+
Sbjct: 1995 DTATD-CI 2001
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 557 RRREIFSAMGDSLRTQCEVGKDVSLDSLLEQYDAVL 450
RR + G T E+GK V D LL++ DA++
Sbjct: 1901 RRVSLLEQEGVRFLTNTEIGKHVPADFLLKENDAII 1936
>Z49868-5|CAA90032.1| 2207|Caenorhabditis elegans Hypothetical protein
W07E11.1 protein.
Length = 2207
Score = 31.9 bits (69), Expect = 0.44
Identities = 21/68 (30%), Positives = 37/68 (54%)
Frame = -1
Query: 448 VGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGG 269
V G+ + + DA GV A+ +L + ++ G +++ E ++ A V++LGGG
Sbjct: 1937 VCTGSTTARDLNVEGRDAKGVCFAMEYLEKSQRRRAG-DDVSWEG-LDPANKKVIILGGG 1994
Query: 268 DTAMDVCV 245
DTA D C+
Sbjct: 1995 DTATD-CI 2001
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 557 RRREIFSAMGDSLRTQCEVGKDVSLDSLLEQYDAVL 450
RR + G T E+GK V D LL++ DA++
Sbjct: 1901 RRVSLLEQEGVRFLTNTEIGKHVPADFLLKENDAII 1936
>Z83120-6|CAB76722.1| 809|Caenorhabditis elegans Hypothetical
protein R06A4.9 protein.
Length = 809
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 478 RFWNNTTRFFVGVGTYRSMKAGLPNEDAPG 389
R WNN+ G + +MK GL EDA G
Sbjct: 529 RMWNNSKGIGAGSDDFTTMKGGLGREDAEG 558
>Z81491-13|CAN86583.1| 181|Caenorhabditis elegans Hypothetical
protein D1086.18 protein.
Length = 181
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +1
Query: 418 LSWNGKCLRQRRTASYCSKSESKE 489
L NGKC+ Q++T S CSK+ SKE
Sbjct: 145 LKSNGKCV-QKKTESVCSKNYSKE 167
>AF016683-9|AAB66197.1| 299|Caenorhabditis elegans Hypothetical
protein K09F6.7 protein.
Length = 299
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 260 DGCLRTALRHGASNVTCAYRRDEANMPGSKKE 165
+GC++ L G S + C + R+ +MPG+K E
Sbjct: 33 EGCIKKML--GNSKIVCPFCREPTDMPGNKME 62
>Z27078-3|CAA81585.1| 251|Caenorhabditis elegans Hypothetical
protein K04H4.5 protein.
Length = 251
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -3
Query: 209 AYRRDEANMPGSKKEVKN-AREEGANFEFNV 120
AY + +AN+ G KKEV+ A + NFE+ V
Sbjct: 86 AYEKSDANLEGDKKEVEAIAPVDSMNFEYYV 116
>Z68753-6|CAD45610.1| 597|Caenorhabditis elegans Hypothetical
protein ZC518.3c protein.
Length = 597
Score = 28.3 bits (60), Expect = 5.5
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +3
Query: 528 PHRAED-FPTACQQGIYSSFERREWPKG*ASHRISGIGGFGTPSTPHG 668
PH A D P Q I + +R+ P A IGG G PSTP G
Sbjct: 544 PHVASDHIPIMAQYAIIPTTHQRQQPLQQAGPAAGVIGG-GFPSTPSG 590
>Z68753-5|CAB54512.2| 613|Caenorhabditis elegans Hypothetical
protein ZC518.3b protein.
Length = 613
Score = 28.3 bits (60), Expect = 5.5
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +3
Query: 528 PHRAED-FPTACQQGIYSSFERREWPKG*ASHRISGIGGFGTPSTPHG 668
PH A D P Q I + +R+ P A IGG G PSTP G
Sbjct: 560 PHVASDHIPIMAQYAIIPTTHQRQQPLQQAGPAAGVIGG-GFPSTPSG 606
>Z68753-4|CAB54511.2| 606|Caenorhabditis elegans Hypothetical
protein ZC518.3a protein.
Length = 606
Score = 28.3 bits (60), Expect = 5.5
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +3
Query: 528 PHRAED-FPTACQQGIYSSFERREWPKG*ASHRISGIGGFGTPSTPHG 668
PH A D P Q I + +R+ P A IGG G PSTP G
Sbjct: 553 PHVASDHIPIMAQYAIIPTTHQRQQPLQQAGPAAGVIGG-GFPSTPSG 599
>AY043268-1|AAK85706.1| 606|Caenorhabditis elegans CCR4 protein.
Length = 606
Score = 28.3 bits (60), Expect = 5.5
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +3
Query: 528 PHRAED-FPTACQQGIYSSFERREWPKG*ASHRISGIGGFGTPSTPHG 668
PH A D P Q I + +R+ P A IGG G PSTP G
Sbjct: 553 PHVASDHIPIMAQYAIIPTTHQRQQPLQQAGPAAGVIGG-GFPSTPSG 599
>U13070-4|AAC46640.2| 531|Caenorhabditis elegans Aldehyde
dehydrogenase protein 9 protein.
Length = 531
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = -3
Query: 557 RRREIFSAMGDSLRTQCE-VGKDVSLD 480
RR EI +GD LRTQ + +GK VSL+
Sbjct: 99 RRGEIVRQIGDKLRTQLQNLGKLVSLE 125
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,901,488
Number of Sequences: 27780
Number of extensions: 366865
Number of successful extensions: 1025
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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