Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0890
         (691 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53460.1 68418.m06644 glutamate synthase [NADH], chloroplast,...    46   2e-05
At5g48370.1 68418.m05976 thioesterase family protein similar to ...    31   0.72 
At3g24440.1 68416.m03067 fibronectin type III domain-containing ...    30   1.3  
At1g25580.1 68414.m03176 no apical meristem (NAM) family protein...    29   2.9  
At5g47220.1 68418.m05822 ethylene-responsive element-binding fac...    27   8.9  

>At5g53460.1 68418.m06644 glutamate synthase [NADH], chloroplast,
            putative similar to SP|Q03460 Glutamate synthase [NADH],
            chloroplast precursor (EC 1.4.1.14) (NADH- GOGAT)
            {Medicago sativa}
          Length = 2208

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 25/68 (36%), Positives = 38/68 (55%)
 Frame = -1

Query: 448  VGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGG 269
            + VG+ +     +P  D  GV+ A+ FL ANTK ++      +  +I+  G  VVV+GGG
Sbjct: 1939 LAVGSTKPRDLPVPGRDLSGVHFAMEFLHANTKSLLDSNH-EDGNYISAKGKKVVVIGGG 1997

Query: 268  DTAMDVCV 245
            DT  D C+
Sbjct: 1998 DTGTD-CI 2004


>At5g48370.1 68418.m05976 thioesterase family protein similar to
           SP|Q9R0X4 48 kDa acyl-CoA thioester hydrolase,
           mitochondrial precursor (EC 3.1.2.-) {Mus musculus};
           contains Pfam profile PF03061: thioesterase family
           protein
          Length = 438

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 111 HR-LDVKFEVGPLFAGVLHFFLRAWHVSFITTISAGDVTR 227
           HR  ++ F     FAG++ +FL   HV F+  +  GD  R
Sbjct: 304 HRAFELAFSTAYTFAGLVPYFLEVDHVDFLRPVDVGDFLR 343


>At3g24440.1 68416.m03067 fibronectin type III domain-containing
           protein contains Pfam profile PF00041: Fibronectin type
           III domain
          Length = 602

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -3

Query: 581 TGINPLLARRREIFSAMGDSLRTQCEVGKDVSLDSLLEQYDAVLRW 444
           TG + L+ R+R+  S   DS   +C+     S+D  LE+   V+RW
Sbjct: 490 TGFDFLMTRKRKAISDSNDSENHECD---SSSIDDTLEKCVKVIRW 532


>At1g25580.1 68414.m03176 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to putative NAM protein (GP:21554371)
           (Arabidopsis thaliana)
          Length = 449

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +2

Query: 431 VSAYANEEPRRIVPKANPKRH 493
           +SA A+ +PR++V K+NP RH
Sbjct: 18  MSASASSDPRQVVWKSNPSRH 38


>At5g47220.1 68418.m05822 ethylene-responsive element-binding factor
           2 (ERF2) identical to SP|O80338 Ethylene responsive
           element binding factor 2 (AtERF2) [Arabidopsis thaliana]
          Length = 243

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 572 NPLLARRREIFSAMGDSLRTQCEVGKDVSLDSLL 471
           N  L RRR+  +   + ++ +CEVG +  +D LL
Sbjct: 208 NGKLKRRRKAENLTSEVVQVKCEVGDETRVDELL 241


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,313,257
Number of Sequences: 28952
Number of extensions: 355119
Number of successful extensions: 1044
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)