Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0889
         (693 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4Z1V3 Cluster: Putative uncharacterized protein; n=3; ...    34   3.8  
UniRef50_Q05FV6 Cluster: Putative uncharacterized protein; n=1; ...    33   6.6  
UniRef50_Q5CXF7 Cluster: Putative uncharacterized protein; n=2; ...    33   8.8  

>UniRef50_Q4Z1V3 Cluster: Putative uncharacterized protein; n=3;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 192

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = +1

Query: 295 SFFYAKEIDLMYFKVSVLSKSLFSFRNLFDLVR*Y*VTEESQSMIYNVNI 444
           SF Y  E+ ++  K+ +LSK+L+ +R ++         E+S+  I N+NI
Sbjct: 11  SFIYNDELKVICMKIVILSKNLYKYRKIYIKYAKNVELEQSKKDIININI 60


>UniRef50_Q05FV6 Cluster: Putative uncharacterized protein; n=1;
           Candidatus Carsonella ruddii PV|Rep: Putative
           uncharacterized protein - Carsonella ruddii (strain PV)
          Length = 275

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 38/157 (24%), Positives = 64/157 (40%), Gaps = 8/157 (5%)
 Frame = -1

Query: 660 LNIVFFHFKRYFDEKV*NKK*L----FFCSMYFFFSYVFVPIVILAYGDI---CYIFR*G 502
           LNI FF    +   K+ +K  +    FF  + FFF Y F+ I+   +  +    + F   
Sbjct: 89  LNIYFFIKNCFLKIKIISKNKINFYIFFSKIIFFFKYSFIKIICFLFCSLFIKFFFFLKI 148

Query: 501 RNYYITQFLKISIS*TYL*YINIIDHTLRLFGNLILTHQIEEIPERKQRFRQYTNFKIHQ 322
              + T +L    +  ++ Y+N   H +  F   I      +     ++F  Y N  I  
Sbjct: 149 NKLFFTSYLINQKNLLFIYYLNYNKHNIVKF--KIFFFHFSKFNFSIEKFFSYNNNNIFN 206

Query: 321 I-NFLCIKKTKGK*FRFA*NSLNSTLFKYIVVTIFLN 214
           + + + I K K   F+   N L   +   I + IFLN
Sbjct: 207 VKSNIYITKKKNFIFQNYENYLKKKVKININLKIFLN 243


>UniRef50_Q5CXF7 Cluster: Putative uncharacterized protein; n=2;
            Cryptosporidium|Rep: Putative uncharacterized protein -
            Cryptosporidium parvum Iowa II
          Length = 1486

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 18/31 (58%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 645  FHFK-RYFDEKV*NKK*LFFCSMYFFFSYVF 556
            FH K RYFD K+ NK  LFF S+  F SY F
Sbjct: 920  FHNKERYFDIKMLNKNSLFFVSILKFDSYTF 950


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 609,595,553
Number of Sequences: 1657284
Number of extensions: 11398697
Number of successful extensions: 22220
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22199
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)